Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq11913 168 2e-39 seq112094 149 2e-33 seq101843 132 1e-28 seq44878 131 5e-28 seq107118 87.8 5e-15 seq105739 80.6 8e-13 seq73624 78.8 3e-12 >seq11913 Length=1468 Score = 168 bits (186), Expect = 2e-39 Identities = 126/148 (85%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 4 CTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| | || | || || | | || |||| |||||||||||||||| Sbjct 148 CTCATTCCAATTGCCCAACTCGAAGGACCAGAGCATTGTTATTCATTGTCACTACCTCCC 89 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 ||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 88 TGTGTCAGTATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 29 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTA 151 ||||||||||||||||||| ||||||| Sbjct 28 AAGGCTCCCTCTCCGGAATCAAACCCTA 1 >seq112094 Length=8836 Score = 149 bits (164), Expect = 2e-33 Identities = 104/117 (89%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 389 TACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT-T 447 ||||||| | || || ||||||||| ||||||||||||||||||||||| ||| | | | Sbjct 2387 TACTATCGAGTAGACTATAACTGATATAATGAGCCATTCGCAGTTTCACAGTACAAAAGT 2446 Query 448 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 2447 GTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCGTATGACTACTGACAG 2503 >seq101843 Length=3561 Score = 132 bits (146), Expect = 1e-28 Identities = 85/93 (91%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||||||||||||||||||| | ||| |||||||||||||| |||||||| |||||||| Sbjct 3410 TATTTATTGTCACTACCTCCCTGCGTCAGGATTGGGTAATTTACGCGCCTGTTGCCTTCC 3351 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135 |||||||||||||| |||||| |||||||| || Sbjct 3350 TTGGATGTGGTAGCAGTTTCTAAGGCTCCCCCT 3318 >seq44878 Length=1234 Score = 131 bits (144), Expect = 5e-28 Identities = 78/82 (95%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 82 CCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 23 Query 122 CTCAGGCTCCCTCTCCGGAATC 143 || ||||||||||||||||||| Sbjct 22 CTAAGGCTCCCTCTCCGGAATC 1 >seq107118 Length=10517 Score = 87.8 bits (96), Expect = 5e-15 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 66 TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA 125 |||| |||||| ||||||| |||||||||||||| ||||||||||||||||||||||| | Sbjct 1709 TGTCAGGATTGAGTAATTTACGCGCCTGCTGCCTGCCTTGGATGTGGTAGCCGTTTCTAA 1768 Query 126 G 126 | Sbjct 1769 G 1769 >seq105739 Length=13849 Score = 80.6 bits (88), Expect = 8e-13 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 91 CTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 139 ||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 4761 CTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCGGG 4809 >seq73624 Length=3371 Score = 78.8 bits (86), Expect = 3e-12 Identities = 54/60 (90%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 424 ATTCGCAGTTTCACTGTATAGAT-TGCTTATACTTAGACATGCATGGCTTAATCTTTGAG 482 |||||||||||||| ||| | | || ||||||||||||||||||||||||||||||||| Sbjct 1481 ATTCGCAGTTTCACAGTACAAAAGTGTTTATACTTAGACATGCATGGCTTAATCTTTGAG 1540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508610568704