Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq94487 179 3e-40 seq98218 134 1e-26 seq110124 122 7e-23 seq76529 113 4e-20 seq110277 105 5e-18 seq64259 82.4 6e-11 >seq94487 Length=3660 Score = 179 bits (198), Expect = 3e-40 Identities = 369/548 (67%), Gaps = 22/548 (4%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||| ||| || | | || | |||| |||||||| |||||||| Sbjct 7 CGGTTCGTGCTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAG 66 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG--- 61170 || || |||||||||| |||||| | || || | ||| | || ||||||| | Sbjct 67 GCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTCAAGGACTGGGCGAAC 126 Query 61171 ----CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGC 61226 || || |||||||| ||||| || || ||| |||| ||||| || || Sbjct 127 CTGACGGATAACGAGCGGTTC-------TTCATCAAGCACGTGCTGGCCTTCTTCGCTGC 179 Query 61227 TTCGGACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAG 61282 ||||| ||||| || ||||| | || |||| ||| | |||||||| | Sbjct 180 CAGCGACGGCATCGTGAACGAGAACCTGGCCAT--GAAC--TTCAGCAATGAGGTGCAGG 235 Query 61283 TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGA 61342 || ||||||| || || |||||||| || ||||| ||||| ||||| ||||||||||| Sbjct 236 TGCCGGAGGCCCGCTGCTTCTACGGTTTTCAGATCGCCATCGAGAACATCCACTCGGAGG 295 Query 61343 TGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCA 61402 ||||| | ||||| || |||||||||| ||| | |||| || | || | Sbjct 296 TGTACTCGCTGCTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGC 355 Query 61403 ATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCA 61462 ||||||||| ||||| ||| |||||| ||||||| | ||||| |||| ||| || Sbjct 356 GTGCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCA 415 Query 61463 CCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTAT 61522 | | | | | | || || ||||||| ||||| | || ||||| | | Sbjct 416 ACCCGCGAGTGTCGTCGTACCCGGAGCGTCTGCTGGCGTTTGCAGCCGTGGAGGGCATCT 475 Query 61523 TTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTC 61582 | ||| || ||||| | | ||||| ||| | ||||| || || || ||||| || | Sbjct 476 TCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCC 535 Query 61583 TGACCTTC 61590 ||| |||| Sbjct 536 TGAGCTTC 543 Score = 145 bits (160), Expect = 6e-30 Identities = 233/334 (70%), Gaps = 22/334 (7%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||| ||| || | | || | |||| |||||||| ||||||||| Sbjct 2937 CGGTTCGTGCTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAA 2996 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG--- 61170 || || |||||||||| |||||| | || || | ||| | || ||||||| | Sbjct 2997 GCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTCAAGGACTGGGCGAAC 3056 Query 61171 ----CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGC 61226 || | |||||||| ||||| || || ||| |||| ||||| ||||| Sbjct 3057 CTGACGGACAACGAGCGGTTC-------TTCATCAAGCACGTGCTGGCCTTCTTCGCCGC 3109 Query 61227 TTCGGACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAG 61282 ||||| ||||| || ||||| | || |||| ||| | || ||||| | Sbjct 3110 CAGCGACGGCATCGTGAACGAGAACCTGGCCAT--GAAC--TTCAGCAATGAAGTGCAGG 3165 Query 61283 TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGA 61342 || ||||||| || || |||||||| |||||||| ||||| ||||| ||||||||||| Sbjct 3166 TGCCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCGGAGG 3225 Query 61343 TGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 |||| | ||||| || |||||||||| ||| Sbjct 3226 TGTATTCGCTGCTCATTGACACGTACATCAAGGA 3259 >seq98218 Length=3782 Score = 134 bits (148), Expect = 1e-26 Identities = 249/362 (69%), Gaps = 9/362 (2%) Strand=Plus/Minus Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 || ||||| || |||| |||| || ||| |||| || |||||||||||||| Sbjct 1938 CTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATGCACACG 1879 Query 61630 GATTTTGC-TGTTT--TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGT 61686 || || || || | || || || || |||||||| | | ||||| || Sbjct 1878 GACTTCGCGTGCCTCATG-TACTCCAAG-----CTGGTGAACAAGCTGCCGGAGAGCCGC 1825 Query 61687 GTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTG 61746 ||| ||||| || || || ||||| || ||||| || || || || |||| | | Sbjct 1824 GTGCACGAGATCGTGCGCGACGCGGTGACGATCGAGCACGAGTTCGTGCGTGACTCGCTC 1765 Query 61747 CCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCC 61806 || || || ||||||||||||| || || |||| ||||| || || || || ||| Sbjct 1764 CCTGTGGAGCTGATCGGCATGAATTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCC 1705 Query 61807 GACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGAT 61866 ||||||||| || | ||||| || | |||||| || || ||||| || || Sbjct 1704 GACCGTCTGCTGTACTCGCTGGGTGTGTCGAAGATCTACAACGTAAAGAACCCGTTCGAC 1645 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926 | ||||||||||| |||||| | |||||||| || ||||||||||| || || ||||| Sbjct 1644 TGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAG 1585 Query 61927 TA 61928 || Sbjct 1584 TA 1583 Score = 123 bits (136), Expect = 2e-23 Identities = 217/316 (69%), Gaps = 22/316 (7%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 |||||||| || ||||| ||||||| ||| || | | || | |||| |||||| Sbjct 2639 GAGAATCCGAACCGGTTCGTGCTGTTCCCGATCCAGGAGCACGAYGTGTGGCAGATGTAC 2580 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161 || |||||||| || || |||||||||| |||||| | || || | ||| |||| Sbjct 2579 AAGAAGGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAG 2520 Query 61162 GACTGGGAG-------CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||| | || | |||||||| ||||| || || ||| |||| Sbjct 2519 GACTGGGCGAACCTGACGGACAACGAGCGGTTC-------TTCATCAAGCACGTGCTGGC 2467 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGC 61270 ||||| || || ||||| ||||| || ||||| | || |||| ||| Sbjct 2466 CTTCTTCGCTGCCAGTGACGGCATCGTGAACGAGAACCTGGCCAT--GAAC--TTCAGCA 2411 Query 61271 AGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATG 61330 | || ||||| || ||||||| || || |||||||| |||||||| || || ||||| Sbjct 2410 ATGAAGTGCAGGTACCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCGATCGAGAACA 2351 Query 61331 TCCACTCGGAGATGTA 61346 ||||||||||| |||| Sbjct 2350 TCCACTCGGAGGTGTA 2335 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 || ||||| ||| ||||||| || || |||||||| |||||||| || || ||||| || Sbjct 2235 GAAGTGCAGGTGCCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCGATCGAGAACATC 2176 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 ||||||||| |||| | ||||| || |||||||||| ||| Sbjct 2175 CACTCGGAGGTGTATTCGCTGCTCATTGACACGTACATCAAGGA 2132 >seq110124 Length=2655 Score = 122 bits (134), Expect = 7e-23 Identities = 318/478 (67%), Gaps = 23/478 (5%) Strand=Plus/Minus Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 ||||||||| | ||| || || ||| || |||||||||||| || || | ||| || Sbjct 809 GAACTCGCCAGCCAGCACTCGGCGGTTGTACATGTTGGACGTGTACGGCTCGATGGACTC 750 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 ||||||| || || ||||| || || || || |||||||| || |||| || ||||| Sbjct 749 GTTGTTGCCGAGGATCTGGGCCGTCGAAGCCGTCGGCATGGGGGCCACCAGCAGCGAGTT 690 Query 65554 TCGCAATCCGT------TCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGG 65607 |||| ||||| ||| || ||| | || | ||||||||||||| Sbjct 689 GCGCAGTCCGTGCTTGATCACGTCCTCCTTGAG-CGTAG-----CCCAGTTCCACATACC 636 Query 65608 TTTATCGTCGACATCC--ACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGT 65665 || |||| ||| |||||| || || | | | || | || || || Sbjct 635 -----CGACGACGGGGTGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTAGCAGGC 581 Query 65666 GAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTG-GTCTCGAG 65724 || || |||| | |||||| || |||||||||| | || | ||||| | Sbjct 580 GAGCCCTGGAACGTCTCGTACGGGCCGAGTTCCTTGGCAATCTC-CATCGACGTCTCCAT 522 Query 65725 TGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTC 65784 ||||| || || ||||||||||| ||| || || || || |||| |||||||| Sbjct 521 GGCGGCGAAGTAGATGGTCTCGAAGATGTTCTTGTTGAGCTCCCGGGCCTTCTCGCTCTC 462 Query 65785 GTACGGCATA-CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGG 65843 | || || || ||| |||| ||| | ||| || || || || || |||||||| |||| Sbjct 461 GAAC-GCGTAGTTCATGAGGATAAACGCGTCCGCGAGGCCCTGGACGCCAATACCAATGG 403 Query 65844 GACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGAT 65901 | || ||||||| ||||| | |||||| || |||||||| |||| ||||| Sbjct 402 GGCGGTGACGCATGTTGGACTTGCGCGCCTCGATGACGGGGTAGTAGTTGACGTCGAT 345 >seq76529 Length=2445 Score = 113 bits (124), Expect = 4e-20 Identities = 314/477 (66%), Gaps = 20/477 (4%) Strand=Plus/Plus Query 65717 GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCA 65776 ||||| | || ||||| || |||||||| || ||| || || || || |||| Sbjct 1332 GTCTCCATGGCAGCAAAGTAGATGGTCTCAAAGATGTTCTTGTTGAGCTCCCGAGCCTTC 1391 Query 65777 TCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAAT 65835 ||||||||| ||| | || ||| |||| ||| | ||| || || || ||||| ||||| Sbjct 1392 TCGCTCTCGAACG-CGTAGTTCATGAGGATAAACGCGTCCGCGAGGCCCTGAACGCCAAT 1450 Query 65836 ACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGAT 65895 |||||||||||| ||||||| ||||| | |||||| || |||||||| |||| Sbjct 1451 ACCGATGGGACGGTGACGCATGTTGGACTTGCGCGCCTCGATCACGGGGTAGTAGTTGAC 1510 Query 65896 ATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAA 65955 ||||| | || || ||||| || ||||| | ||| | |||| | Sbjct 1511 GTCGATGACCTTGTTTAAGTTGCGGGTGACCAC-------CTTGGTCAC-----TTCGTA 1558 Query 65956 ATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGA 66015 ||| || || | | | | || | |||| |||||||| || || | ||| Sbjct 1559 --CAA---CTTCTGGTAG-TTGAAAACTCCTTCCTCCACGAACTTGGGCAGCGCCACAGA 1612 Query 66016 TGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAG 66075 || | |||||| ||||| | |||||| || | || ||||| | | || ||| | Sbjct 1613 CGCTAAGTTGCACACAGCCACCTCGTCCGGCGACGTGTACTCCATCACCTCACAGCATAA 1672 Query 66076 ATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTT 66135 || ||| |||| || ||||| | ||||| || || |||||| ||| || ||||| Sbjct 1673 GTTGCTGGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCAGCGTCCTT 1732 Query 66136 GTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192 ||||| ||| | || || ||||| | |||| || | |||||| ||| || Sbjct 1733 GTACAACATAAAGGGCACTCCCGTCTCGATCTGGGCGTCCAATATGGCGAACCACAG 1789 >seq110277 Length=6173 Score = 105 bits (116), Expect = 5e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 61708 GCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATG 61767 ||||| || ||||| || || || || |||| | | || || || ||||| ||| Sbjct 5612 GCGGTGACGATCGAGCACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGCTGATCGGTATG 5553 Query 61768 AATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTG 61827 || | || || |||| ||||| || || || || |||||||||||| || | | Sbjct 5552 AACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTA 5493 Query 61828 GGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTG 61887 ||| || | |||||| || || ||||| || || | ||||||||||| |||||| Sbjct 5492 GGTGTGTCGAAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTG 5433 Query 61888 GATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 | |||||||| || ||||||||||| || || ||||| || Sbjct 5432 CAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 5392 >seq64259 Length=514 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 66440 GCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCG 66499 || ||||| || |||| |||||||||||| |||||| |||| ||||| || || ||||| Sbjct 136 GCGTGCCAAGGCTCCAAGTAGATGGCGAAGGAGCCCTTACGCTTGCCTCCGCCCTGGTCC 77 Query 66500 ACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCA 66559 ||||| || ||| | ||| || || |||| ||| || | || || || || ||| Sbjct 76 ACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGGGGATGATGCCATTGGACGAGCCG 17 Query 66560 TTGGTGCC 66567 || ||||| Sbjct 16 TTCGTGCC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396993950819360