Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq75604 178 3e-41 >seq75604 Length=22698 Score = 178 bits (196), Expect = 3e-41 Identities = 303/433 (70%), Gaps = 5/433 (1%) Strand=Plus/Plus Query 1101 ATCAAGCAAGGCAATG-GCTATTACCTTGTTCCACGTAACCGTGATCTGCCTATCCAAGG 1159 ||||| ||||| | || | || ||||| |||| | || || || | ||||| ||||| Sbjct 6103 ATCAAACAAGG-ACTGCGGTACTACCTCGTTCTTTGCAAGCGCGACCCACCTATTCAAGG 6161 Query 1160 CTGGATCGATCATCACACCAAGTCAAAAACGAAAATCAACGAGGACTTCAAGCTGTATGA 1219 ||||||||| ||||||| || |||| || || |||||| | | || |||| Sbjct 6162 CTGGATCGACCATCACAAAAATACAAAGACCAAGATCAACAAACAACTCGTTTATCATGA 6221 Query 1220 GTACGGCACTC-TACCTGCTGACAAACCCAATATCTCTGCTCAAGTGACCAAGAGATCGC 1278 |||| |||| | ||| | || || || | ||||||||||| ||||| ||| Sbjct 6222 AAACGGAACTCCTCCCTTCA-ACGGTCCAAACGTGTCTGCTCAAGTCACCAAAAGAAGAA 6280 Query 1279 CAGAGGAAAAGAAGAGAAAACTTGACGATGTCATCAAGGAGATGCGAGGCATGATCGAAG 1338 | || ||||| | | | || || || || |||||| |||||||| | ||||||| Sbjct 6281 CGGAAGAAAA-ACGCGTAAGCTAGATGACATCATCATCGAGATGCGTCAACTCATCGAAG 6339 Query 1339 AAGGACGCGAAGAGGAAGCCTTCACCAAGTTTCCTCGAAACTACTTGACCTATGGAGAAA 1398 ||||||| ||| ||||||| ||||||||||| || | |||||| | |||||| |||| | Sbjct 6340 AAGGACGTGAAAAGGAAGCGTTCACCAAGTTCCCCAGGAACTACATCACCTATAGAGAGA 6399 Query 1399 AGCTGAAAGCTATGATCTCACAGCGTCGTGACTTTTTCAAGAGCAACGGTGACCCTCACA 1458 || | ||| | ||| | || ||||| ||||| ||| |||||| ||||| |||| Sbjct 6400 AGATTAAATCAATGGTTGGACGAAAGCGTGATTTTTTGAAGTCCAACGGGGACCCGCACA 6459 Query 1459 TCTGGCTTACTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCATCTATCCTG 1518 | ||| | | ||| | || || |||| |||| | || || |||| ||| | || || Sbjct 6460 TTTGGTTAATTGGCGCACCGGGATCTGACAAGACAGCAATTCTGCATGTCGTGTACCCAA 6519 Query 1519 CGTATTACAACAA 1531 ||| |||||||| Sbjct 6520 AGTACTACAACAA 6532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11882182978380