Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq87625 96.9 5e-15 seq62897 87.8 2e-12 >seq87625 Length=4707 Score = 96.9 bits (106), Expect = 5e-15 Identities = 229/341 (67%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 162499 ACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTA 162558 ||||| ||| | ||| ||||| | |||| ||||| || || || || || || | Sbjct 3927 ACACCGCAGGACGAAGAGACTCCGTTCCATCCGCGATCACCCTACGGTGTCGCGAAGCAG 3986 Query 162559 TATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGT 162618 | | || |||| || ||| | | ||| ||| | ||| |||| | ||| Sbjct 3987 TTCGCTTTTTGGAGTGTCGTGAACCATCGCGAAGCCTACGGCATGTTTGCCGTGAACGGG 4046 Query 162619 ATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTC 162678 ||||||||||| ||||||||| | || | ||| || |||||||| ||||||||| | Sbjct 4047 ATTCTATTCAACCACGAAAGCCCCCGGCGTGGACCAACCTTCGTCACTCGCAAGATCACC 4106 Query 162679 CGAGC-CTTGTCCCGAATTAGTG-TGGGACTCCAAAGTGATCTACAACTTGGAAACCTCA 162736 ||||| |||| || ||| ||| ||| | | ||||| || | || |||||| Sbjct 4107 CGAGCTGTTGT-GCGTATTCGTGCTGGCATTGAGAAGTG-CCTCTTTGTGGGGAACCTCG 4164 Query 162737 ATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTC 162796 | || ||| |||||||| ||||| |||||||| ||| |||||| ||||||| Sbjct 4165 ACGCGAAACGAGACTGGGGCCACGCTCGCGACTACGTGGAGTGCATGTGGCGCATGCTTC 4224 Query 162797 AGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAG 162837 | || || | || ||||||| ||| | || || || ||| Sbjct 4225 AACACGATACTCCGGATGATTTTGTTGTTGCTACAGGAGAG 4265 >seq62897 Length=1353 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 162616 GGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATC 162675 || ||| ||||||| ||||||||| | || | ||| || |||||||| ||||||||| Sbjct 214 GGGATTTTATTCAACCACGAAAGCCCCCGACGTGGACCAACCTTCGTCACTCGCAAGATC 273 Query 162676 GTCCGAGCC-TTGTCCCGAATTAGTG-TGGGACTCCAAAGTGATCTACAACTTGGAAACC 162733 |||||| |||| | | ||| ||| ||| | | ||||| || | || |||| Sbjct 274 ACCCGAGCTGTTGTGC-GCATTCGTGCTGGTATTGAGAAGTGC-CTCTTTGTGGGGAACC 331 Query 162734 TCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGC 162793 || | || ||||||||||| ||||| |||||||| ||| |||||| |||| Sbjct 332 TCGACGCGAAGCGTGACTGGGGTCACGCTCGCGACTACGTGGAGTGCATGTGGCGAATGC 391 Query 162794 TTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAG 162837 |||| || || | || ||||||| ||| | || || || ||| Sbjct 392 TTCAACACGATACTCCGGATGATTTTGTTGTTGCTACAGGAGAG 435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690435200784240