Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq69 255 5e-63 seq1 174 1e-38 >seq69 Length=184949 Score = 255 bits (282), Expect = 5e-63 Identities = 1097/1698 (65%), Gaps = 71/1698 (4%) Strand=Plus/Minus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 ||||||||||||||||| || || ||| || || || |||||||||| || || Sbjct 90245 TAGTACATGCCGGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTCAACTT- 90187 Query 65183 GCATAAT-TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACC 65241 || | |||| ||||| | |||| |||| |||||| || ||| |||||| ||| Sbjct 90186 GCTCACCGTCGGGTCGGCGATGTGCACGTTCAGCGACTGGCTTTGACAGATGTAGGCACC 90127 Query 65242 ACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT--ATCTCCCAGACGGTCTTGTAC 65299 |||||| || |||| || | | ||||| | | | || ||||| || || |||||| Sbjct 90126 ACGATCAGCTGCCAAATCTA--ACACGACCTTTTGCTTGATTTCCCACACTGTTTTGTAC 90069 Query 65300 AGGCGACGTACCTCAATTG------GAATCTC-CTCAATGTCCTGGACTGAACCAC-GAC 65351 | ||| |||| ||||| | || | | || || || |||| | | Sbjct 90068 TT------TTCCTTGATTGCATCAGGAATCGAGCGCACTTTT-TGCACCGAGCCACCGTC 90016 Query 65352 GTGCAATAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAA 65411 ||||| | | | || |||| | || ||| | ||| | ||||| || | | Sbjct 90015 ATGCAAGATTTGG-TTGCGCACCTCAGGTGTCCAGATACCAAGTTCGATGAGCTCCTT-- 89959 Query 65412 CCAAGTGACGATTGATGACT-TGG--AACTCGCCGGACAGTACACGACGGACATAGATGT 65468 || | || ||| |||| | | || || || | || || ||||| || |||| Sbjct 89958 -CATGAGATACTTGTTGACGATCGTAAATTCACCAGCGAGCACGCGACGATTGTACATGT 89900 Query 65469 TGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTG 65528 ||||||||| || |||| ||||||| | ||||| | || || ||||| || || |||| Sbjct 89899 TGGACGTGAATGGCTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTG 89840 Query 65529 GCATGGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACG-CAAT 65587 ||||||| || | ||||| ||||| |||| || | | | | ||| | |||| Sbjct 89839 GCATGGGCGCCAACAACAGGGAGTTGCGCACACCATGTTTAGCGAC-TTGAGCTTTCAAT 89781 Query 65588 TCGTCCCAGTTCCACAT--CGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCA 65645 | |||| | ||| | | | || | || ||| ||||||||| || | Sbjct 89780 GCAGCCCAATCCCAGAGACCAG---ATGTTGGAGTGACACC--CCACATATCAAACTGGA 89726 Query 65646 GGGTTCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAA 65705 | | || | || | || || || | || | || ||| || | |||||| |||| Sbjct 89725 AGATGCCCTTGCTCACAGGGGAGCCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAA 89666 Query 65706 GTTG-ACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGT 65764 ||| | || || | || | || || | || | || || |||||| | || | | Sbjct 89665 GTTCCATAGATGCT-TCCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAAT 89607 Query 65765 TCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCT 65824 || || || | || || ||| | || | ||||| || | ||| | || |||| ||| Sbjct 89606 TCTCGCGCTTGCTCACTTTCGAAGGGGAACCCCATGAGAATAAACGCATCAGCCAACCCT 89547 Query 65825 TGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGG 65884 || || |||||||| | || ||||| || | ||| || || | || || || | || Sbjct 89546 TGCACACCAATACCCACAGGGCGATGTCGTAGATTAGATCGCTTGGCTTCTGGGATCGGA 89487 Query 65885 TAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGC 65944 ||||| |||||||| || | |||| ||| | ||||| | | | ||| ||| Sbjct 89486 TAGTAGTTGATATCAATGACCTTGTTCAGATTTCTGGTCACAATCTTCGTGATT--TCGT 89429 Query 65945 AATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGA 66004 | ||| | ||| ||| | || | | | || || ||||| |||| Sbjct 89428 AGAGCTTC----TGAAA--GTTAAACAC-ACC---ATTGTCG------ACAAATTTGGAC 89385 Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || |||| || || | |||||| || || | ||||| | || |||||||| | Sbjct 89384 AGTGCAATGGACGCCAAGTTGCACACCGCGACTTCGTCCTTGGATGTGTACTCGACGACC 89325 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || ||||| |||||| |||| || |||||||| || || ||||| |||||||||| Sbjct 89324 TCACAGCACAAGTTACTGGAGCGAATAGTGCCCAAGTTTTGCTGATTCGACTTGCGATTG 89265 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 |||||||||||||| | |||||| || |||||||| || | || | || | |||||| Sbjct 89264 CATGCATCCTTGTAGAGCATGTAAGGTGTGCCGGTTTCGATCTGAGCGTCCAAAATGGCG 89205 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCG-TTCGTAATGTTC 66243 ||| | | ||||| | || | | | | || | | || | |||||| | Sbjct 89204 AACCACAATTGTTGCGCCTTGATGGT-CTTGCGGGCCAAGCCCTGGGCTTCGTACTTGGT 89146 Query 66244 GTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGT-GGAC 66302 ||| | | ||||| |||||||| ||| |||||| | | ||| | || | Sbjct 89145 GTACAAGGCCTCGAATTCATCACCCCAGCAGTCGAACAGACCAGT-CGCTTCATTAGGGC 89087 Query 66303 ACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGA 66362 | | || ||| || || | ||| ||||| ||| || | ||| || ||||| | Sbjct 89086 AGAAAAGACTCCACTCGCCGTTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACA 89027 Query 66363 GGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGA 66422 |||||| || ||||| ||||| || || ||| | |||||||| || | ||| || | Sbjct 89026 TGGCGTAAAACAGATCACGTGCACGATGAAGTTCATTACCGTGATTCTTCCTCAAATCCA 88967 Query 66423 GGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTT 66482 |||||||||| | |||||||||||| || |||| ||||| || ||||| || | || | Sbjct 88966 GGAACTCAAATACGTCGGCATGCCACGGCTCCAAATAGATTGCAAACGACCCTTTGCGCT 88907 Query 66483 TGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGA 66542 |||| |||||||| || ||||| ||||| | ||||| ||||||||||| || || | Sbjct 88906 TGCCACCACCTTGATCAACGTAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAA 88847 Query 66543 GCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGA 66601 ||||| || ||||||| || ||| ||| | | | |||| || || || | ||| Sbjct 88846 TACCGTTGGACGTGCCATTTGTACCGCGGAT-GTAGCTATTCGTCGCGCGAATGTTGTG- 88789 Query 66602 ACATTCAGA--CCAATACCACCGGCCGTCTTCGAGATGGCAGCACAAT--CGGCCACTGT 66657 ||| | || || ||||| || ||| ||| |||||| || || | | | ||| Sbjct 88788 -CATGCTGATGCCGATACCCCCTGCCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGT 88730 Query 66658 CCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTG 66717 | | | ||||| ||||| || || | | |||| || | | | || ||| ||||| Sbjct 88729 C--GTAAATGCCCTCAATAGAATCGTCTTGCATGGCCAATAAGAAACACGAAGACAGTTG 88672 Query 66718 GGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGA 66777 || ||||| | || || || || ||||| |||||||| ||| | | | || Sbjct 88671 TGGCCGTGGTGTACCTGCGTTAAACAGTGTTGGTGTGGCGTGCGTGAAGAACGAGAGCGA 88612 Query 66778 CATGTAATTGTACGTCTC 66795 |||||| | |||||||| Sbjct 88611 CATGTACTCATACGTCTC 88594 >seq1 Length=1523961 Score = 174 bits (192), Expect = 1e-38 Identities = 586/897 (65%), Gaps = 23/897 (3%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || ||| || || |||||||| ||| | | ||| | ||| ||||||| Sbjct 464752 GAGAACCCAAATCGATTTGTGTTGTTCCCAATCCAAGAGCCGGAAGTGTGGGCCATGTAC 464811 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161 || ||||| ||||| || ||||| | || || | |||||| | ||| |||| Sbjct 464812 AAGAAGGCCGAAGCGAGTTTTTGGACCGCTGAAGAACTGGATTTGGTGCATGACCTGAAG 464871 Query 61162 GACTGGGAGC-GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTT 61220 ||||||| | | | ||| | |||| ||||| || || || ||||||||||| Sbjct 464872 GACTGGGTCAAGATGACCGA-CAACGAACGCTTCTTCATCAAGCACGTCTTGGCGTTCTT 464930 Query 61221 TGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTG--GAACGTTTCGCGCAG-GAGGT 61277 ||| || || || || || || || || | | ||| |||| | || || || Sbjct 464931 TGCTGCCAGCGATGGGATTGTGAACGAAAACCTTGCGATGAA--TTTCA-GTAGTGAAGT 464987 Query 61278 GCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTC 61337 ||||||| | |||||||| || || ||||| |||||||||||||| || || | ||||| Sbjct 464988 GCAAGTGCCTGAGGCGCGCTGCTTTTACGGATTCCAGATTGCCATTGAAAACATTCACTC 465047 Query 61338 GGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATT 61397 || ||||| || | || || || ||||||| || | | | || || | || Sbjct 465048 CGAAGTGTACTCGCTTTTGATTGACACATACATCAAAGACCCGACCGAGAAGGACCACTT 465107 Query 61398 GTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTG 61457 | | ||| ||||| || || || |||| ||| || |||||| || || || Sbjct 465108 GCTACGTGCTATCGAAACCATCCCATGCGTGACCAAGAAGGCCAGTTGGGCATTGAAGTG 465167 Query 61458 GATC-ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 | | || | | | ||| | | || |||||| | |||||||||||| ||||||| Sbjct 465168 GTGCGACTCGCGC-GCTGCTGCCTATGCTGAACGGATTTTGGCATTTGCGGCTGTCGAGG 465226 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | | || || || || || | | ||||| ||||||||||| ||||| || |||| Sbjct 465227 GAATCTTCTTTTCGGGTTCCTTCTGCTCCATCTTCTGGTTGAAGAAGCGTGGGCTCATGC 465286 Query 61577 CCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG 61636 | ||||| | ||| ||||| | || || || || || |||| ||||| |||| Sbjct 465287 CTGGTCTCAGTTTCTCGAATGAACTCATCAGTCGTGATGAAGGGTTGCACTGTGACTTTG 465346 Query 61637 C-TGTTT--TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTG 61693 | || || || || || | | || || || | ||||| || ||| | Sbjct 465347 CGTGCTTGATG-TACTC-----CAAGCTCGTCAACAAGCTTCCGGAGTCACGCGTGCACG 465400 Query 61694 AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCT 61753 | || || |||| || || || || || ||||||| | | || | | || || Sbjct 465401 AAATCATTGGTGACGCCGTCACGATTGAGAAGGAATTCGTCAAGGATTCGCTCCCTGTGG 465460 Query 61754 CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTC 61813 | | || |||||||| | || |||| ||||| |||||||| ||| || ||| Sbjct 465461 AATTGATTGGCATGAACTCGACGCTGATGTGTCAGTACATTGAATTCTGTGCTGATCGTT 465520 Query 61814 TGTT--GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCAT 61871 || | || || | |||| | |||||| || | || ||||| ||||| | || Sbjct 465521 TGCTACATGCGCTTGGTGTATCCA--AGATCTACAACGCCAAGAACCCTTTTGACTGGAT 465578 Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||||||| || ||| | |||||||| ||||| || ||||| ||||| || || || Sbjct 465579 GGACATGATCTCACTGCAGGGCAAGACCAATTTCTTTGAGAAGCGTGTGGGTGAATA 465635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566497938400