Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600475.1_202016- 03-01] 310 sequences; 37,582,498 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq17 102 1e-16 >seq17 Length=533465 Score = 102 bits (112), Expect = 1e-16 Identities = 256/384 (67%), Gaps = 4/384 (1%) Strand=Plus/Plus Query 162455 TCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAA 162514 ||||||||||| ||||||||||| || || || || | ||||| || || |||| Sbjct 483796 TCTACCAAGCGTCAACCAGTGAGCTCTACGGCAAAGCGCAAGCTACACCGCAAAACGAAA 483855 Query 162515 CCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCA 162574 ||| ||| | ||||| ||||| || ||||| | || || | | || || ||||| | Sbjct 483856 ACACGCCATTCTATCCGCGATCACCGTATGGCATCGCCAAGCAGTTTGCGTACTGGAGCG 483915 Query 162575 TCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACG 162634 || |||||| | ||| || | ||| ||| | || ||||| || || |||| Sbjct 483916 TCGTGAACTACCGTGAAGCGTACGGCATGTTTGCAGTGAATGGCATTCTCTTTAACCACG 483975 Query 162635 AAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGC-CTTGTCCCGA 162693 |||| |||| || || ||||| ||||||||||||||| || || |||| || Sbjct 483976 AAAGTCCACGTAGGGGGCCAACGTTTGTCACACGCAAGATCACGCGCGCAGTTGT-GCGC 484034 Query 162694 ATTAGTGTGGG-ACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTG 162752 ||| | ||| | | |||| ||| | |||| ||||| | | | || || || Sbjct 484035 ATTCACGCGGGTATTGACGAGTG-TCTTTACATTGGCAACCTTGAATCGAGGCGCGATTG 484093 Query 162753 GGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGA 162812 ||| || || || ||||| ||| ||||||| ||||| ||||| || | || || Sbjct 484094 GGGTCATGCGCGGGATTACGTCGAGTGTATGTGGCGCATGCTGCAGCATGACGAACCCGA 484153 Query 162813 TGATTATGTGATCGCAACTGGTGA 162836 |||| ||| | || || || || Sbjct 484154 GGATTTCGTGGTTGCCACGGGCGA 484177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691456520595600