Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq17 255 5e-63 seq2 174 1e-38 >seq17 Length=584494 Score = 255 bits (282), Expect = 5e-63 Identities = 887/1360 (65%), Gaps = 43/1360 (3%) Strand=Plus/Plus Query 65447 AGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGA 65506 || || |||||| || ||||||||||||| || |||| ||||||| | ||||| | Sbjct 103296 AGCACGCGACGGTTGTACATGTTGGACGTGAATGGCTCAATGGATTCATTATTGCCCAAG 103355 Query 65507 ATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAATCCGTTC 65566 || || ||||| || || ||||||||||| || | ||||| ||||| |||| || | Sbjct 103356 ATCTGAGCAGTCGACGCCGTTGGCATGGGCGCCAACAACAGGGAGTTGCGCACACCATGT 103415 Query 65567 ATTTCAATGTTGTGACG-CAATTCGTCCCAGTTCCACAT--CGGTTTATCGTCGACATCC 65623 | | | ||| | |||| | |||| | ||| | | | || | || | Sbjct 103416 TTAGCGAC-TTGAGCTTTCAATGCAGCCCAATCCCAGAGACCAG---ATGTTGGAGTGAC 103471 Query 65624 ACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAAACTATCG 65683 || ||||||||| || | | | || | || | || || || | || | || Sbjct 103472 ACC--CCACATATCAAACTGGAAGATGCCCTTGCTCACAGGGGAGCCCTCGTAAGTTTCA 103529 Query 65684 TACACTCCCTCCTCCTTGGCAAGTTG-ACAGCTGGTCTCGAGTGCGGCAAAATAAATGGT 65742 ||| || | |||||| ||||||| | || || | || | || || | || | || Sbjct 103530 TACGGGCCATACTCCTTTGCAAGTTCCATAGATGCT-TCCATGGCTCCATAGTACAGCGT 103588 Query 65743 CTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAG 65802 || |||||| | || | ||| || || | || || ||| | || | ||||| || Sbjct 103589 TTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGCTCACTTTCGAAGGGGAACCCCATGAG 103648 Query 65803 GACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGA 65862 | ||| | || |||| ||||| || |||||||| | || ||||| || | ||| || Sbjct 103649 AATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGGCGATGTCGTAGATTAGA 103708 Query 65863 ACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGT 65922 || | || || || | || ||||| |||||||| || | |||| ||| | || Sbjct 103709 TCGCTTGGCTTCTGGGATCGGATAGTAGTTGATATCAATGACCTTGTTCAGATTTCTGGT 103768 Query 65923 CACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGT 65982 ||| | | | ||| ||| | ||| | ||| ||| | || | | | | Sbjct 103769 CACAATCTTCGTGATT--TCGTAGAGCTTC----TGAAA--GTTAAACAC-ACC---ATT 103816 Query 65983 GCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTC 66042 | || ||||| |||| || |||| || || | |||||| || || | ||||| Sbjct 103817 GTCG------ACAAATTTGGACAGTGCAATGGACGCCAAGTTGCACACCGCGACTTCGTC 103870 Query 66043 AGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATT 66102 | || |||||||| | || ||||| |||||| |||| || |||||||| || Sbjct 103871 CTTGGATGTGTACTCGACGACCTCACAGCACAAGTTACTGGAGCGAATAGTGCCCAAGTT 103930 Query 66103 CTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162 || ||||| |||||||||||||||||||||||| | |||||| || |||||||| || Sbjct 103931 TTGCTGATTCGACTTGCGATTGCATGCATCCTTGTAGAGCATGTAGGGTGTGCCGGTTTC 103990 Query 66163 AACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCT 66222 | || | || | |||||| ||| | | ||||| | || | | | | || Sbjct 103991 GATCTGAGCGTCCAAAATGGCGAACCACAATTGTTGCGCCTTGATGGT-CTTGCGGGCCA 104049 Query 66223 ACCTTTGCG-TTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACA 66281 | | || | |||||| | ||| | | ||||| |||||||| ||| ||| Sbjct 104050 AGCCCTGGGCTTCGTACTTGGTGTACAAGGCCTCGAATTCATCACCCCAGCAGTCGAACA 104109 Query 66282 GACATGGACACTTGTGT-GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGC 66340 ||| | | ||| | || || | || ||| || || | ||| ||||| | Sbjct 104110 GACCAGT-CGCTTCATTAGGGCAGAAAAGACTCCACTCGCCGTTGGCTTCCACACGCTTC 104168 Query 66341 ATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATG 66400 || || | ||| || ||||| | |||||| || ||||| ||||| || || ||| | Sbjct 104169 ATGAACAAATCTGGGATCCACATGGCGTAAAACAGATCACGTGCACGATGAAGTTCATTA 104228 Query 66401 CCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAG 66460 |||||||| || | ||| || ||||||||||| | |||||||||||| || |||| ||| Sbjct 104229 CCGTGATTCTTCCTCAAATCCAGGAACTCAAATACGTCGGCATGCCACGGCTCCAAATAG 104288 Query 66461 ATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTG 66520 || || ||||| ||| | || ||||| |||||||| || ||||| ||||| | ||| Sbjct 104289 ATTGCAAACGACCCCTTGCGCTTGCCACCACCTTGATCAACGTAACGAGCAGTGTCATTG 104348 Query 66521 AAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGAT 66580 || ||||||||||| || || | ||||| || ||||||| || || ||| | | | Sbjct 104349 AACACACGCAACATAGGCACAATACCGTTGGACGTGCCATTTGTACCACGGAT-GTAGCT 104407 Query 66581 CCTCGT-GCCCGTATATCGTGAACATTCAGA--CCAATACCACCGGCCGTCTTCGAGATG 66637 |||| || || || | ||| ||| | || || ||||| || ||| ||| |||||| Sbjct 104408 ATTCGTCGCGCGAATGTTGTG--CATGCTGATGCCGATACCCCCTGCCCACTTGGAGATG 104465 Query 66638 GCAGCACAAT--CGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCA 66695 || || | | | |||| | | ||||| ||||| || || | | |||| || Sbjct 104466 CATGCGCATTGCTTGAGAGTGTC--GTAAATGCCCTCAATAGAATCGTCTTGCATGGCCA 104523 Query 66696 GGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAG 66755 | | | || ||| ||||| || ||||| | || || || || ||||| | Sbjct 104524 ATAAGAAACACGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAACAGTGTTGGTGTGG 104583 Query 66756 CGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTC 66795 ||||||| ||| | | | |||||||| | |||||||| Sbjct 104584 CGTGCGTGAAGAACGAGAGCGACATGTACTCATACGTCTC 104623 >seq2 Length=1145976 Score = 174 bits (192), Expect = 1e-38 Identities = 586/897 (65%), Gaps = 23/897 (3%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || ||| || || |||||||| ||| | | ||| | ||| ||||||| Sbjct 131691 GAGAACCCAAATCGATTTGTGTTGTTCCCAATCCAAGAGCCGGAAGTGTGGGCCATGTAC 131750 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161 || ||||| ||||| || ||||| | || || | |||||| | ||| |||| Sbjct 131751 AAGAAGGCTGAAGCGAGTTTTTGGACCGCTGAAGAACTGGATTTGGTGCATGACCTGAAG 131810 Query 61162 GACTGGGAGC-GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTT 61220 ||||||| | | | ||| | |||| ||||| || || || ||||||||||| Sbjct 131811 GACTGGGTCAAGATGACCGA-CAACGAACGCTTCTTCATCAAGCACGTCTTGGCGTTCTT 131869 Query 61221 TGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTG--GAACGTTTCGCGCAG-GAGGT 61277 ||| || || || || || || || || | | ||| |||| | || || || Sbjct 131870 TGCTGCCAGCGATGGGATTGTGAACGAAAACCTTGCGATGAA--TTTCA-GTAGTGAAGT 131926 Query 61278 GCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTC 61337 ||||||| | |||||||| || || ||||| |||||||| ||||| || || | ||||| Sbjct 131927 GCAAGTGCCTGAGGCGCGCTGCTTTTACGGATTCCAGATCGCCATTGAAAACATTCACTC 131986 Query 61338 GGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATT 61397 || ||||| || | || || || ||||||| || | | | || || | || Sbjct 131987 CGAAGTGTACTCGCTTTTGATTGACACATACATCAAAGACCCGACCGAGAAGGACCACTT 132046 Query 61398 GTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTG 61457 | | ||||||||| || || || |||| ||| || |||||| || || || Sbjct 132047 GCTACGTGCCATCGAAACCATCCCATGCGTGACCAAGAAGGCCAGTTGGGCATTGAAGTG 132106 Query 61458 GATC-ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 | | || | | | ||| | | || |||||| | |||||||||||| ||||||| Sbjct 132107 GTGCGACTCGCGCG-CTGCTGCCTATGCTGAACGGATTTTGGCATTTGCGGCTGTCGAGG 132165 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | | || || || || || | | ||||| ||||||||||| ||||| || |||| Sbjct 132166 GAATCTTCTTTTCGGGTTCCTTCTGCTCCATCTTCTGGTTGAAGAAGCGTGGGCTCATGC 132225 Query 61577 CCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG 61636 | ||||| | ||| ||||| | || || || || || |||| ||||| |||| Sbjct 132226 CTGGTCTCAGTTTCTCGAATGAACTCATCAGTCGTGATGAAGGGTTGCACTGTGACTTTG 132285 Query 61637 C-TGTTT--TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTG 61693 | || || || || || | | || || || | ||||| || ||| | Sbjct 132286 CGTGCTTGATG-TACTC-----CAAGCTCGTCAACAAGCTTCCGGAGTCACGCGTGCACG 132339 Query 61694 AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCT 61753 | || || |||| || || || || || ||||||| | | || | | || || Sbjct 132340 AAATCATTGGTGACGCCGTCACGATTGAGAAGGAATTCGTCAAGGATTCGCTCCCTGTGG 132399 Query 61754 CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTC 61813 | | || |||||||| | || |||| ||||| |||||||| ||| || ||| Sbjct 132400 AATTGATTGGCATGAACTCGACGCTGATGTGTCAGTACATTGAATTCTGTGCTGATCGTT 132459 Query 61814 TGTT--GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCAT 61871 || | || || | |||| | |||||| || | || ||||| ||||| | || Sbjct 132460 TGCTACATGCGCTTGGTGTATCCA--AGATCTACAACGCCAAGAACCCTTTTGACTGGAT 132517 Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||||||| || ||| | |||||||| ||||| || ||||| ||||| || || || Sbjct 132518 GGACATGATCTCACTGCAGGGCAAGACCAATTTCTTTGAGAAGCGTGTGGGTGAATA 132574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566643299200