Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq58 111 2e-19 >seq58 Length=246340 Score = 111 bits (122), Expect = 2e-19 Identities = 258/384 (67%), Gaps = 4/384 (1%) Strand=Plus/Plus Query 162455 TCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAA 162514 ||||||||||| ||||||||||| ||||| || || | ||||| || || |||| Sbjct 199152 TCTACCAAGCGTCAACCAGTGAGCTCTATGGCAAAGCGCAAGCTACACCGCAAAACGAAA 199211 Query 162515 CCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCA 162574 ||| ||| | ||||| ||||| || ||||| | || || | | || || ||||| | Sbjct 199212 ACACACCATTCTATCCGCGATCACCGTATGGCATCGCCAAGCAGTTTGCGTACTGGAGCG 199271 Query 162575 TCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACG 162634 || |||||| | ||| || | ||| ||| | || ||||| || || |||| Sbjct 199272 TCGTGAACTACCGTGAAGCGTACGGCATGTTTGCAGTGAATGGCATTCTCTTTAACCACG 199331 Query 162635 AAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGC-CTTGTCCCGA 162693 |||| ||||||| || ||||| ||||||||||||||| || || |||| || Sbjct 199332 AAAGTCCACGCAGGGGGCCAACGTTTGTCACACGCAAGATCACGCGCGCAGTTGT-GCGC 199390 Query 162694 ATTAGTGTGGG-ACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTG 162752 ||| | ||| | | |||| ||| | |||| ||||| | | | || || || Sbjct 199391 ATTCACGCGGGTATTGACGAGTG-TCTTTACATTGGCAACCTTGAATCGAGGCGCGATTG 199449 Query 162753 GGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGA 162812 ||| || || || ||||| ||| ||||||| ||||| ||||| || | || || Sbjct 199450 GGGTCATGCGCGGGATTACGTCGAGTGTATGTGGCGCATGCTGCAGCATGACGAACCCGA 199509 Query 162813 TGATTATGTGATCGCAACTGGTGA 162836 |||| ||| | || || || || Sbjct 199510 GGATTTCGTGGTTGCCACGGGCGA 199533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691456779892800