Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq1573 187 5e-45 seq322 185 2e-44 seq2912 161 2e-37 >seq1573 Length=1109 Score = 187 bits (206), Expect = 5e-45 Identities = 238/325 (73%), Gaps = 7/325 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| ||| |||||| ||| | | ||||||| || ||||| | | || Sbjct 913 AGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCTTAGGCG 854 Query 71 -GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 ||||| |||| ||||||| |||||| | | ||| ||| | || ||| ||||||| Sbjct 853 TGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTA-TATTCTGTAGCAAGGTTAAC 795 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | || ||||| || |||| |||| |||||| ||||| ||||| || Sbjct 794 CGTATAGGGG-----AGCCGCAGGGAAACCGAGTCTTAACTGGGCGTTAAGTTGCAGGGT 740 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| ||||||| |||||||| ||| | ||||||||||| |||||| | || Sbjct 739 ATAGACCCGAAACCCGGTGATCTAGCCATGGGCAGGTTGAAGGTTGGGTAACACTAACTG 680 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 ||||||||||||| || |||||||| || ||||||||| | || | ||||||||||| Sbjct 679 GAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGG 620 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 |||||||||| |||| |||||| || Sbjct 619 CCAATCAAACCGGGAGATAGCTGGT 595 >seq322 Length=2746546 Score = 185 bits (204), Expect = 2e-44 Identities = 238/326 (73%), Gaps = 8/326 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| ||| |||||| ||| | | ||||||| || |||||| | | | Sbjct 661586 AGGGGAGTGAAACAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCCTTCTTTATGG 661527 Query 71 G--TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAA 128 | |||| |||| ||||||| |||||| | | ||| ||| | || ||| ||||||| Sbjct 661526 GGGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTA-TATTCTGTAGCAAGGTTAA 661468 Query 129 GGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 | | || ||||| || |||| |||| |||||| ||||| ||||| || Sbjct 661467 CCGTATAGGGG-----AGCCGCAGGGAAACCGAGTCTTAACTGGGCGTTAAGTTGCAGGG 661413 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 ||||| ||||||| |||||||| ||| | ||||||||||| |||||| | | Sbjct 661412 TATAGACCCGAAACCCGGTGATCTAGCCATGGGCAGGTTGAAGGTTGGGTAACACTAACT 661353 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 |||||||||||||| || |||||||| || ||||||||| | || | |||||||||| Sbjct 661352 GGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAG 661293 Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||| |||| |||||| || Sbjct 661292 GCCAATCAAACCGGGAGATAGCTGGT 661267 >seq2912 Length=300 Score = 161 bits (178), Expect = 2e-37 Identities = 195/264 (74%), Gaps = 6/264 (2%) Strand=Plus/Plus Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| | || ||| ||||||| Sbjct 1 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTA-TATTCTGTAGCAAGGTTAACC 59 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | || ||||| || |||| |||| |||||| ||||| ||||| || Sbjct 60 GTATAGGGG-----AGCCGCAGGGAAACCGAGTCTTAACTGGGCGTTAAGTTGCAGGGTA 114 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||| ||| | ||||||||||| |||||| | ||| Sbjct 115 TAGACCCGAAACCCGGTGATCTAGCCATGGGCAGGTTGAAGGTTGGGTAACACTAACTGG 174 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 |||||||||||| || |||||||| || ||||||||| | || | |||||||||||| Sbjct 175 AGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGC 234 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 ||||||||| |||| |||||| || Sbjct 235 CAATCAAACCGGGAGATAGCTGGT 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972769240064