Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2011 347 2e-93 seq2046 241 2e-61 seq322 150 3e-34 seq442 140 5e-31 seq1884 102 1e-19 seq523 100 4e-19 seq468 96.9 5e-18 >seq2011 Length=380 Score = 347 bits (384), Expect = 2e-93 Identities = 208/216 (96%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 214 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 157 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 156 CTCGTTTAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTT 97 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 96 CCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 37 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 216 |||||||||||||||||||||||||||||||||||| Sbjct 36 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 1 >seq2046 Length=381 Score = 241 bits (266), Expect = 2e-61 Identities = 186/217 (86%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| || |||||||||||| | Sbjct 167 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCATTTACTAGGAATT-C 224 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| |||||||| | ||||||| |||| |||||| Sbjct 225 CTCGTTCAAGACTGAAAATTGCAACAGTCTATCCCTAGCACGATGCGCATTCACAAGATT 284 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||| |||||| ||| |||||||||| ||||||||||||||||||||| Sbjct 285 ACCCAGACCTATCGATCAAGGTTATATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCG 344 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 216 |||||||||||||||||||||||||| ||||||||| Sbjct 345 GCCCAGAACATCTAAGGGCATCACAGGTCTGTTATTG 381 >seq322 Length=2746546 Score = 150 bits (166), Expect = 3e-34 Identities = 155/198 (78%), Gaps = 11/198 (6%) Strand=Plus/Plus Query 23 CAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGC 82 |||||| |||| ||||||| || || |||||||| ||||||| ||||| ||| Sbjct 2616023 CAACGCAAGCT-GATGACTTGCAATTCTTAGGAATT-CCTCGTTCAAGAC-------TGC 2616073 Query 83 AATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGT 141 || |||||||| | | |||| |||| |||||||||| ||||| ||| |||||| Sbjct 2616074 AACAGTCTATCCCTAGCGCGATACGCGTTCACAAGATTACCCAGACCTATCGATCAAGGT 2616133 Query 142 GATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATC 201 | || |||||||||| ||||||||||||||||||||||||||| |||||||||| ||| Sbjct 2616134 GGTATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCGGCCCAGTACATCTAAGGATATC 2616193 Query 202 ACAGACCTGTTATTGCCT 219 || |||| | ||||||| Sbjct 2616194 -CACACCTATCATTGCCT 2616210 >seq442 Length=1242542 Score = 140 bits (154), Expect = 5e-31 Identities = 95/107 (89%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 122 CCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181 || ||||| ||| |||||| | | |||||||||| ||||||||||||||||||||||| Sbjct 804577 CCAGACCTATCGATCAAGGTTAGATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCGGC 804636 Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 804637 CCAGAACATCTAAGGGCATCACAGGTCTGTTATTGCCTCCAACTTCC 804683 >seq1884 Length=313614 Score = 102 bits (112), Expect = 1e-19 Identities = 79/93 (85%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 136 CAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 195 |||||| ||| |||||||||| |||| |||||| ||||||| |||| ||||||| || Sbjct 68472 CAAGGTTATATACTCGTTGAAG-CATCGTAGTAGCGTGCGTGCGACCCATAACATCTTAG 68414 Query 196 GGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||| ||||| ||| ||||||| Sbjct 68413 GGCATCACAGACCTGGTATTGTCTCCAACTTCC 68381 >seq523 Length=2102221 Score = 100 bits (110), Expect = 4e-19 Identities = 119/160 (74%), Gaps = 11/160 (7%) Strand=Plus/Plus Query 68 AAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGA 126 ||||| || |||||||| ||||| || | ||||||| |||| ||||||||| || Sbjct 1408009 AAGACAAA-AATTGCAACAGTCTATTCCTAGCACGATGCGCATTCACAAGATTACCTAGA 1408067 Query 127 CCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 186 || ||| ||| | ||| |||||| ||| |||||||| ||| |||| |||| Sbjct 1408068 CCCATCGATCAATTTTATATGCTCGTTAAATTCATCAGTGGAGCACGCGAGCGG------ 1408121 Query 187 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 |||||||||||||||||||||||||| |||| || || Sbjct 1408122 ---TCTAAGGGCATCACAGACCTGTTATTACCTCCAATTT 1408158 >seq468 Length=1367571 Score = 96.9 bits (106), Expect = 5e-18 Identities = 80/95 (84%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||| ||||||||||| |||| ||| || ||||||||||| ||| Sbjct 1243968 GTACAAAGGGCAGGGACGTTATCAACGCGAGC-TGATTACTTGCACTTACTAGGAA-TTC 1243911 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC 95 |||| | |||| || |||||||| |||||||| Sbjct 1243910 CTCGCTCTAGACTAAAAATTGCAACTGTCTATCCC 1243876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751976964830