Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq2138 125 4e-27 seq2369 109 3e-22 seq322 82.4 4e-14 >seq2138 Length=593 Score = 125 bits (138), Expect = 4e-27 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| | Sbjct 561 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 503 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 502 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 445 >seq2369 Length=603 Score = 109 bits (120), Expect = 3e-22 Identities = 96/119 (81%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA--AATGATAACATCGC 58 ||||||||||||||||||||||| || ||||| || |||| || | ||| | Sbjct 571 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAAGTAAACGACTG 512 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 511 CCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 453 >seq322 Length=2746546 Score = 82.4 bits (90), Expect = 4e-14 Identities = 90/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA--AAATGATAACATCGC 58 ||||||||||||||||| ||||| || |||| || |||| || | ||| | Sbjct 2616552 GAACCCAAAGACTTTGAATTCTCATACAGTGCTGACAAGGTCATTTAAAGTAAACGACTG 2616611 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||| | ||||| ||||||||| | ||| |||||||| ||||||| ||| ||||||| Sbjct 2616612 CCAATCTCGAGTCGACATAGTTTATGATTATGACTACGATGGTATCTAATCATCTTCGA 2616670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278391747180