Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2138 233 4e-59 seq2369 221 2e-55 seq322 98.7 2e-18 >seq2138 Length=593 Score = 233 bits (258), Expect = 4e-59 Identities = 221/278 (79%), Gaps = 3/278 (1%) Strand=Plus/Plus Query 42 CCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAA 101 ||||| |||||| | | || | || | | |||||||||| ||||||||||| |||| Sbjct 168 CCCTTAACTGGGCGGGTCGTGCCTCCGGCGTTGTTACTTTGAAGAAATTAGAGTGCTCAA 227 Query 102 AGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTAT 160 |||| |||| |||| | |||||||||||||| |||| | |||||| | |||| |||| Sbjct 228 AGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTAT 286 Query 161 TTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTC 220 | ||||| | ||| || ||||||||||| ||||| ||||||||| | ||||| Sbjct 287 TACGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTT 346 Query 221 AATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACC 280 || |||||||||||||||||||||||||| ||||| ||| ||||||||||| || || Sbjct 347 CATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCC 406 Query 281 AAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||| ||||||||||| |||| Sbjct 407 AAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 443 >seq2369 Length=603 Score = 221 bits (244), Expect = 2e-55 Identities = 200/248 (81%), Gaps = 8/248 (3%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCAT 130 ||||| |||||||||||||||||| ||||||||| || |||| |||||||||||||| Sbjct 208 TTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTAGCTCATTTGAATACATTAGCAT 267 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 ||||||||| ||| ||| | | |||||||||||||||| | ||| |||||||| Sbjct 268 GGAATAATAAGATATGACTTTGG--TCTATTTTGTTGGTTTGCAC-ACCAGAGTAATGAT 324 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||||||||| ||| |||||| | |||| | |||||||||||||||||||||| | Sbjct 325 TAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGATCGCT 384 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||| | || |||||||| || ||||||||||||||||||||||| |||||||| Sbjct 385 GAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGAAA 443 Query 311 GTTAGGGG 318 |||||||| Sbjct 444 GTTAGGGG 451 >seq322 Length=2746546 Score = 98.7 bits (108), Expect = 2e-18 Identities = 104/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||| |||||| ||| |||| | |||| | |||||||||||||||||| Sbjct 2616806 GTAATGATTGATAGGGGCAGTTGGGGTTACTTATATTTCAGCGTCAGAGGTGAAATTCTT 2616747 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||| | |||| | || |||||||| || |||||||||| ||||||||||| Sbjct 2616746 GGATCGCTGAAAGATGAGCTTTGGCGAAAGCATTTACCAAGGATGCTTTCATTAATC-CA 2616688 Query 303 GAACGAAAGTTAGGGG 318 |||| ||||||||||| Sbjct 2616687 GAACTAAAGTTAGGGG 2616672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915171061376