Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq6 230 1e-57 seq3159 221 5e-55 seq2664 78.8 4e-12 seq810 78.8 4e-12 >seq6 Length=2952 Score = 230 bits (254), Expect = 1e-57 Identities = 225/285 (79%), Gaps = 10/285 (4%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||||| | Sbjct 1596 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 1537 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCC----GTGAGGGTGCACCAT 518 |||||| | || || ||| ||| || || || ||| ||| ||||||||| Sbjct 1536 AACCCGCAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCCCTCGTG-GGGTGCACCGC 1481 Query 519 CGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAA 578 ||||||| | |||| | | || || || |||| |||||| |||| ||||||||||| Sbjct 1480 CGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAA 1421 Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638 ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||| Sbjct 1420 GATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGC 1361 Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 1360 GATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 1316 Score = 156 bits (172), Expect = 2e-35 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||||||||||||| | || ||| |||||||| | || || |||||| Sbjct 1979 CGAGTCGGGTTGTTTGGGAATGCAGCCCCAATAGGGCGGTAAATTCCGTCCAAGGCTAAA 1920 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || |||| |||||||||||| ||||||| | || ||||||||||||| |||||| | Sbjct 1919 TACTGGCGTGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 1860 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| | ||||||||| Sbjct 1859 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 1819 >seq3159 Length=1063 Score = 221 bits (244), Expect = 5e-55 Identities = 233/312 (75%), Gaps = 36/312 (12%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAAC 466 ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||| |||| Sbjct 317 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATATGTGCAAGTGTTAGGGTGTGGAAAC 258 Query 467 CCGTGCGCGTAATGAAAGTGAACGG----------------AGGTGGGAACCCGTGAGGG 510 || ||||||||||||||| || | |||| |||| || ||| Sbjct 257 CCCAGCGCGTAATGAAAGTAAAGGACAGCGTAAGTTGTCTTAGGTAGGAAATGCTGCGGG 198 Query 511 T----------------GCACCATCGACCGATCCTGATGTCTTCGGATG---GATTTGAG 551 |||| ||||||||||| ||| ||| | || |||||||| Sbjct 197 CTTCGGCTTGTGGTGTGGCACTATCGACCGATCATGAACCCTTGTGGTGAAAGATTTGAG 138 Query 552 TAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCA 611 | ||||| | |||||| | ||||||||||||||||||||||||| ||||||||||||| Sbjct 137 TTTGAGCACATATGTTGGTATCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCA 78 Query 612 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGG 671 | |||| ||||||||| ||||| |||| ||||| ||||||||||||||||| || |||| Sbjct 77 GGGGAATTTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAACTTGG 18 Query 672 GTATAGGGGCGA 683 |||||||||||| Sbjct 17 GTATAGGGGCGA 6 Score = 167 bits (184), Expect = 1e-38 Identities = 131/157 (83%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || | || |||||||| | ||||||||||||| Sbjct 866 GAGTCGCGTTGTTTGAGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 807 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| |||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 806 ATTGGTGCGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 747 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 | ||||||||| || || ||||| || |||||||||| Sbjct 746 ATAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAA 710 >seq2664 Length=604197 Score = 78.8 bits (86), Expect = 4e-12 Identities = 77/98 (79%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 52 TTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGA 111 ||||||||||||| | |||| || |||| |||| | |||||||||| ||||| | Sbjct 435699 TTGGGAATGCAGCGCAAAATAGGTGGTAG-TTTCATTTAAAGCTAAACATTGGTGCAATG 435757 Query 112 CCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAG 149 |||||||| ||||||| |||| ||||||||||||| Sbjct 435758 CCGATAGCAGACAAGTATTGTGAGAGAAAGATGAAAAG 435795 >seq810 Length=2620190 Score = 78.8 bits (86), Expect = 4e-12 Identities = 78/101 (77%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||| || |||||||||| | ||||||| |||| |||||||||||| ||| Sbjct 855298 CTAAATATCGGTACGAGACCGATACCAAACAAGTACTGTGAGGAAAAGATGAAAAGAACT 855357 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGG 194 ||| || |||| |||| | || |||| ||||| |||||| Sbjct 855358 TTGAGAACAGAGCTAAAGAATACCTGAATTTGTTAAAAGGG 855398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079932175100