Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01000345.1 Length=193 Score E Sequences producing significant alignments: (Bits) Value seq288 116 4e-24 seq2339 96.9 4e-18 >seq288 Length=778693 Score = 116 bits (128), Expect = 4e-24 Identities = 144/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAA 60 |||||||| ||||||| ||||||| |||||||| ||||| ||||| || | | Sbjct 422155 TTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTACTTCAGCACCGTAGT 422214 Query 61 GATAACTCGTCATCAGCTCCCGGCCTTA---GAATCCCGGATTTACCTAAGATTCCAGCC 117 | |||||||||| | | || ||| ||| |||||||||||||| |||| ||| Sbjct 422215 GC---CTCGTCATCACACCTCAGCGTTAAAAGAAGTCCGGATTTACCTAAACTTCCCGCC 422271 Query 118 TACCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATC 177 ||| ||||||| |||||||| |||| ||| | |||||||||||||||| || || Sbjct 422272 TACATGCTTAAACCGGGACAACCGTCGCCCGGCTAACATAGCCTTCTCCGTCCCCCCTTC 422331 Query 178 GCATTAACCAGAAGTA 193 ||| |||| ||||| Sbjct 422332 GCAGTAACACCAAGTA 422347 >seq2339 Length=309 Score = 96.9 bits (106), Expect = 4e-18 Identities = 138/189 (73%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 1 TTACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAA 60 |||||||| ||||||| ||||||| ||||||| ||||| | |||||| || | | Sbjct 247 TTACCTGATGCTTAGAGGCTTTTCCTGGAAGCTGGGCATTTATCACTTCAGCACCGTAGT 188 Query 61 GATAACTCGTCATCAGCTCCCGGCCTTAG-AATC--CCGGATTTACCTA-AGATTCCAGC 116 | |||||| ||| | | || ||| || | |||||||||||| | | ||| || Sbjct 187 GC---CTCGTCGTCACGCCTCAGCGTTAACAAGCGTCCGGATTTACCTGGACACTCC-GC 132 Query 117 CTACCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCAT 176 |||| ||||||| |||||||| |||| |||| |||||||||||||||| || | Sbjct 131 CTACACGCTTAAACCGGGACAACCGTCGCCCGGCTGATATAGCCTTCTCCGTCCCCCCTT 72 Query 177 CGCATTAAC 185 |||| |||| Sbjct 71 CGCAGTAAC 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518384120436