Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq2253 233 5e-59 seq2727 156 1e-35 seq3144 114 3e-23 >seq2253 Length=601 Score = 233 bits (258), Expect = 5e-59 Identities = 191/231 (83%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 180 AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAA 239 |||||||||| |||||||| ||||||| |||||||||||||| || |||||||| ||| Sbjct 599 AGAGGGGGGTAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGG 540 Query 240 TGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAA 299 |||||||||| ||||||||| || ||||||||||| | ||||||||||||||||||| Sbjct 539 TGGCGAAGGCGGCCCCCTGGACAAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAA 480 Query 300 CAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAAC-TAGTTGTTGGGGATT 358 ||||||||||||||||||||||||||||| |||||||| || || | | |||| | | Sbjct 479 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCT 420 Query 359 TACTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | | | | | || ||||||||||| |||| ||||||||||||| ||| Sbjct 419 TGAGGCGTGGCTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTAC 369 >seq2727 Length=321 Score = 156 bits (172), Expect = 1e-35 Identities = 97/104 (93%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | |||| ||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 218 TACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGC 277 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT 106 |||||||||||||||||||||||||||||||| |||||||||| Sbjct 278 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGT 321 >seq3144 Length=3372 Score = 114 bits (126), Expect = 3e-23 Identities = 233/341 (68%), Gaps = 10/341 (3%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGT 60 ||| | || || ||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 2155 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 2097 Query 61 GCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAG---ACA 117 || ||| ||| ||||||| | | ||||||||| || | ||| |||| | |||| | | Sbjct 2096 GCGAGCATTATTCGGAATGATTAGGCGTAAAGAGTTTGTAGGTGGTTTTTTAAGTTGAAA 2037 Query 118 GGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTG 177 || || | | ||| ||| | | | || |||| ||| |||| | Sbjct 2036 GGAACAAATTA---GAGCTCAACTTTATATATTTTTTCAAAACTGAGAAACTCGAGTATA 1980 Query 178 TC-AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACAC 236 ||||| ||||||| | || || | |||| ||| |||| | ||||| | Sbjct 1979 AATAGAGGATAATGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAAGAT 1920 Query 237 CAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGC 296 ||| |||||||||| ||||| | |||||| || | |||||||| |||| ||| Sbjct 1919 CAAAGGCGAAGGCAATTATCTGGGTATATACTGACACTGAGAAACGAAAGCTTGGGTAGC 1860 Query 297 AAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||| ||||||||||||| ||||||||| || |||||||| Sbjct 1859 GAACGGGATTAGATACCCCGGTAGTCCATGCTGTAAACGAT 1819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289559222848