Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq288 167 3e-39 seq2100 114 2e-23 seq252 114 2e-23 >seq288 Length=778693 Score = 167 bits (184), Expect = 3e-39 Identities = 193/255 (76%), Gaps = 10/255 (4%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| |||||||| || |||| | || || |||| Sbjct 421892 TTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTC-GTGTTTGCACA 421950 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC-- 119 | ||||||||||| |||||||| || || || | ||| |||| | | |||| Sbjct 421951 GTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGACTGGCTTCGGCTCGG 422010 Query 120 --AACACGTCGTTC-ACCAGCAGTGGCACC---CCTTCTCCCGAAGTTACGGGGCCATTT 173 | || ||| || ||| | | | || | ||||||||||||||||||| |||||| Sbjct 422011 GGAGCAAGTCCCTCCACCTAC-GCGCCAGCGTGCCTTCTCCCGAAGTTACGGCACCATTT 422069 Query 174 TGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTG 233 |||| | |||||| ||| ||||| | | | |||||| |||||||||||||||||||||| Sbjct 422070 TGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTG 422129 Query 234 TGTCGGTTTACGGTA 248 ||||||||| |||| Sbjct 422130 TGTCGGTTTGGGGTA 422144 >seq2100 Length=826 Score = 114 bits (126), Expect = 2e-23 Identities = 176/250 (70%), Gaps = 16/250 (6%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| Sbjct 611 CTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAG 553 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||| ||||||| ||||||||||| ||| ||||| | || ||| | | Sbjct 552 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACC---------TAA 502 Query 121 ACACGTCGTTCACCAGCAGT--GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCG 178 | | || | | | | || || || |||||||||||| | |||||||||| Sbjct 501 A----TTATTTATAATAATTTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCG 446 Query 179 AATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCG 238 | |||||| | |||||| || | || ||||||| | ||| |||| ||||||||||| Sbjct 445 AGTTCCTTCAATACAGTTTACTCATACACCTTAGTTTACTCAACCTATTCACCTGTGTCG 386 Query 239 GTTTACGGTA 248 ||||| |||| Sbjct 385 GTTTAGGGTA 376 >seq252 Length=912309 Score = 114 bits (126), Expect = 2e-23 Identities = 176/250 (70%), Gaps = 16/250 (6%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| Sbjct 883182 CTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAG 883124 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||| ||||||| ||||||||||| ||| ||||| | || ||| | | Sbjct 883123 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACC---------TAA 883073 Query 121 ACACGTCGTTCACCAGCAGT--GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCG 178 | | || | | | | || || || |||||||||||| | |||||||||| Sbjct 883072 A----TTATTTATAATAATTTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCG 883017 Query 179 AATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCG 238 | |||||| | |||||| || | || ||||||| | ||| |||| ||||||||||| Sbjct 883016 AGTTCCTTCAATACAGTTTACTCATACACCTTAGTTTACTCAACCTATTCACCTGTGTCG 882957 Query 239 GTTTACGGTA 248 ||||| |||| Sbjct 882956 GTTTAGGGTA 882947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694378729226