Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq288 194 2e-47 seq2100 78.8 9e-13 seq252 78.8 9e-13 >seq288 Length=778693 Score = 194 bits (214), Expect = 2e-47 Identities = 127/140 (91%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 19 GGAGGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTA 78 ||||||||||||||| ||| | ||| |||||||||||||| ||||| |||||||| Sbjct 422025 GGAGGGACTTGCTCCCCGAGCCGAAGCCAGTCGAAGATACCAGCTGGCTGCAACTGTTTA 421966 Query 79 TTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGG 138 |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 421965 TTAAAAACACAGCACTGTGCAAACACGAAAGTGGACGTATACGGTGTGACGCCTGCCCGG 421906 Query 139 TGCCGGAAGGTTAATTGATG 158 |||||||||||||||||||| Sbjct 421905 TGCCGGAAGGTTAATTGATG 421886 >seq2100 Length=826 Score = 78.8 bits (86), Expect = 9e-13 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 67 TGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTG 126 |||||||||||| ||||||| || ||||||| || | || || ||||||||| || Sbjct 525 TGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGGTAACATGATGTATAGGGTCTG 584 Query 127 ACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||||||||||| ||||| |||| Sbjct 585 ACACCTGCCCGGTGCTGGAAGATTAA 610 >seq252 Length=912309 Score = 78.8 bits (86), Expect = 9e-13 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 67 TGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTG 126 |||||||||||| ||||||| || ||||||| || | || || ||||||||| || Sbjct 883096 TGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGGTAACATGATGTATAGGGTCTG 883155 Query 127 ACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||||||||||| ||||| |||| Sbjct 883156 ACACCTGCCCGGTGCTGGAAGATTAA 883181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476785394722