Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq288 242 8e-62 seq2100 226 6e-57 seq252 226 6e-57 >seq288 Length=778693 Score = 242 bits (268), Expect = 8e-62 Identities = 220/275 (80%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAG--TGCCC 58 ||| | |||||||||| | || | ||||||||| |||||| || ||||||| || || Sbjct 421704 TACACTGCATCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCC 421763 Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 | || ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 421764 A--TCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 421821 Query 119 GACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTA 178 |||||||||||||||||||||||||||| ||||||| | | |||||| |||| ||| Sbjct 421822 GACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCTTGCGCTA 421881 Query 179 ACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 || | |||||||||| ||||||||||||||||| | ||||| || ||| || Sbjct 421882 ACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTCGT 421941 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGC 273 || ||| | |||||||||| |||||||| || Sbjct 421942 GTTTGCACAGTGCTGTGTTTTTAATAAACAGTTGC 421976 >seq2100 Length=826 Score = 226 bits (250), Expect = 6e-57 Identities = 267/362 (74%), Gaps = 21/362 (6%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||| ||||| |||||| | | ||||||| | | ||||| Sbjct 783 GCATCTTCACGGATAATTCAAATTCACTGAGTCTGTATTGGAGACAGCGGGGATGTCGTT 724 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 723 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 664 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 ||||||||||||||||||||||| ||| | || | ||| | |||| | Sbjct 663 GAGTTACGGCCGCCGTTTACTGGGACTTCAATT---------TAATGCGCAAACATTTTT 613 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 ||||| |||||||||||||||||| ||||| |||||||||| | || | | ||||||| Sbjct 612 TCTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 553 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT--GTCAT---- 300 | ||| |||||| ||||||||||| |||||| | || ||| | || Sbjct 552 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTAAATTATTTAT 493 Query 301 ----AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAA 356 | ||| || || |||| ||||||| |||||||||||||||||||| ||| Sbjct 492 AATAATTTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTT--CAA 435 Query 357 TA 358 || Sbjct 434 TA 433 >seq252 Length=912309 Score = 226 bits (250), Expect = 6e-57 Identities = 267/362 (74%), Gaps = 21/362 (6%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||| ||||| |||||| | | ||||||| | | ||||| Sbjct 883354 GCATCTTCACGGATAATTCAAATTCACTGAGTCTGTATTGGAGACAGCGGGGATGTCGTT 883295 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 883294 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 883235 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 ||||||||||||||||||||||| ||| | || | ||| | |||| | Sbjct 883234 GAGTTACGGCCGCCGTTTACTGGGACTTCAATT---------TAATGCGCAAACATTTTT 883184 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 ||||| |||||||||||||||||| ||||| |||||||||| | || | | ||||||| Sbjct 883183 TCTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 883124 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT--GTCAT---- 300 | ||| |||||| ||||||||||| |||||| | || ||| | || Sbjct 883123 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTAAATTATTTAT 883064 Query 301 ----AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAA 356 | ||| || || |||| ||||||| |||||||||||||||||||| ||| Sbjct 883063 AATAATTTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTT--CAA 883006 Query 357 TA 358 || Sbjct 883005 TA 883004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062366406912