Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq2253 376 7e-102 seq3144 251 2e-64 seq867 125 2e-26 seq524 122 3e-25 >seq2253 Length=601 Score = 376 bits (416), Expect = 7e-102 Identities = 311/375 (83%), Gaps = 7/375 (2%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 371 TACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 312 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||||||||||||||||||| | ||||||||||| || | Sbjct 311 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTACTCTTGACATCCAGCGAACTTAG 252 Query 121 TAGAGATAGAGGTTT--CCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 |||||| | ||| ||||| ||| || | |||||||| ||||||| ||||||| Sbjct 251 CAGAGAT---GCTTTGGTGCCTTC-GGGAACGCTGAGACAGGTGCTGCATGGCTGTCGTC 196 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 ||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 195 AGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCCTTTGTT 136 Query 239 GCCATC-ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 |||| | | | ||| |||| ||| ||||||| |||| |||| ||||||||||||| Sbjct 135 GCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGG 76 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || |||||||| |||||||| |||||| || ||||||||||||||||||||||| | Sbjct 75 GATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCA 16 Query 358 TACAAAGGGCAGCGA 372 ||||||| | ||||| Sbjct 15 TACAAAGAGAAGCGA 1 >seq3144 Length=3372 Score = 251 bits (278), Expect = 2e-64 Identities = 356/499 (71%), Gaps = 35/499 (7%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1749 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 1690 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||| ||||| || | | | | | Sbjct 1689 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAA----TTTTTATA 1641 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 || | ||| | | | | ||||||| ||||||| ||||||||||||||| Sbjct 1640 TAAAATTTTTATAT-------AAAAA---ACAGGTGTTGCATGGCTGTCGTCAGCTCGTG 1591 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA--TC 244 | |||| ||||| |||||| ||| |||||||||||||| || |||||| | | | Sbjct 1590 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCCTATTATTAGTTACTAATTT 1531 Query 245 ATTA------AGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 |||| | | ||||||| | ||| | ||||||||||| Sbjct 1530 ATTATAAAAAATAAAAGTACTCTAATAAAAAAATTAATGATAGGTTAATGGAAGGTGGGG 1471 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 | |||||||| || ||||| ||||||||| ||||||||||||||||||||||||| | | Sbjct 1470 ATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAATGGTAATT 1411 Query 359 ACAAAGGGCAGCGAAACCG-----CGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTT 413 |||| | | || | | || || | |||||| | ||||| | ||| |||| Sbjct 1410 ACAATGAGAGGCAATAACGATTTAAAAGTTGGAGCAAA-ACTTTAAAGATTATCTTAGTT 1352 Query 414 CGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC 473 |||||| | ||| |||||| | ||| |||||||||||||||||||||| ||| |||| Sbjct 1351 CGGATTAAGGGCTGAAACTCGCCCTTATAAAGCTGGAATCGCTAGTAATCGCAGAACAGC 1292 Query 474 ATGCTACGGTGAATACGTT 492 ||||| ||||||||| ||| Sbjct 1291 ATGCTGCGGTGAATATGTT 1273 >seq867 Length=1199 Score = 125 bits (138), Expect = 2e-26 Identities = 80/87 (92%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 410 AGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGAT 469 ||| ||||||| |||||||||||||||| |||||| |||||||||||||||||||||| Sbjct 1197 AGTCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTAGAT 1138 Query 470 CAGCATGCTACGGTGAATACGTTCCCG 496 ||| ||||||||||||||||||||||| Sbjct 1137 CAGAATGCTACGGTGAATACGTTCCCG 1111 >seq524 Length=1474960 Score = 122 bits (134), Expect = 3e-25 Identities = 146/199 (73%), Gaps = 21/199 (11%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1227452 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 1227511 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||| ||||| || | | | | | Sbjct 1227512 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAA----TTTTTATA 1227560 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 || | ||| | | | | ||||||| ||||||| ||||||||||||||| Sbjct 1227561 TAAAATTTTTATAT-------AAAAA---ACAGGTGTTGCATGGCTGTCGTCAGCTCGTG 1227610 Query 187 TCGTGAGATGTTGGGTTAA 205 | |||| ||||| |||||| Sbjct 1227611 TTGTGAAATGTTTGGTTAA 1227629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503952443520