Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq442 291 1e-76 seq322 167 4e-39 seq523 127 3e-27 seq2011 105 1e-20 seq1884 105 1e-20 seq2046 93.3 7e-17 >seq442 Length=1242542 Score = 291 bits (322), Expect = 1e-76 Identities = 216/250 (86%), Gaps = 8/250 (3%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 804616 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGGTCTGTTATTGCCTC 804675 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC-----AGCCACCAACC 128 ||||||| |||| | || | |||| ||||||||||||||| | | | ||||| Sbjct 804676 CAACTTCCTTTGGTTTGATTACCCAA-AGTCCCTCTAAGAAGTCCACAAACCTACCAAAA 804734 Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || || || |||||||||| | ||||||||||||||| |||||||||||||||| Sbjct 804735 ATGGTAAGCGGAACTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACA 804794 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 804795 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTC 804854 Query 249 TCAATCTGTC 258 ||| |||||| Sbjct 804855 TCAGTCTGTC 804864 >seq322 Length=2746546 Score = 167 bits (184), Expect = 4e-39 Identities = 170/218 (78%), Gaps = 8/218 (4%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||||| |||||||||| ||| || |||| | ||||||| Sbjct 2616153 TCAGTGTAGCGCGCGTGCGGCCCAGTACATCTAAGGATATC-CACACCTATCATTGCCTA 2616211 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 | ||| | |||| | || | ||| ||||||||| ||||| | | | | |||| | Sbjct 2616212 CAGCTTTCTTTGGTTTGATTACTCAAAAGTCCCTCTTAGAAGTCCTCAATCTACCAAAAA 2616271 Query 134 CGATGGGG----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | | | |||||||||| | ||| |||| || | || ||||||||| ||||||| Sbjct 2616272 TGGTAAGCAAAACTATTTAGCACGCGAAGTTCTCTTT-GCTAACGGAATTAAGCAGACAA 2616330 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACC 227 ||||||||||||||||||||||| |||||||||||||| Sbjct 2616331 ATCACTCCACCAACTAAGAACGGTCATGCACCACCACC 2616368 >seq523 Length=2102221 Score = 127 bits (140), Expect = 3e-27 Identities = 183/254 (72%), Gaps = 22/254 (9%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||| ||| |||| |||| |||||||||||||||||||||||||| |||| Sbjct 1408102 TCAGTGGAGCACGCGAGCGG---------TCTAAGGGCATCACAGACCTGTTATTACCTC 1408152 Query 76 AAACTTCCATTGG-CTGGAAGCCAATAGTC--CCTCTA----AGAAGCCAGCCACCAACC 128 || || | |||| || || | | || ||| | | ||| | || | | ||| Sbjct 1408153 CAATTTTCTTTGGTCTAATTGCTCAAAATCTTCCTTTTTAATATAAGTCCGCAAACTACC 1408212 Query 129 ATAGTCGAT----GGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 | | | | ||| |||||||||| | |||||||| |||||| | | |||| || Sbjct 1408213 AAAAATGGTAAGGGGGACTATTTAGCACGCGGAGGTCTCGGTCGTTAGCA-ACTTAATCA 1408271 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 ||| ||||||||| |||||| |||||||||| ||||||| | || |||||||||||| | Sbjct 1408272 GACGTATCACTCCATCAACTAGGAACGGCCATCCACCACCTCTCACAGAATCAAGAAA-A 1408330 Query 245 GCTATCAATCTGTC 258 || |||||||||| Sbjct 1408331 TCTTTCAATCTGTC 1408344 >seq2011 Length=380 Score = 105 bits (116), Expect = 1e-20 Identities = 66/71 (93%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71 TACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 12 Query 61 ACCTGTTATTG 71 ||||||||||| Sbjct 11 ACCTGTTATTG 1 >seq1884 Length=313614 Score = 105 bits (116), Expect = 1e-20 Identities = 92/112 (82%), Gaps = 3/112 (3%) Strand=Plus/Minus Query 21 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 80 |||||| ||||||| |||| ||||||| ||||||||||||||||| ||||| ||| |||| Sbjct 68443 GTAGCGTGCGTGCGACCCATAACATCTTAGGGCATCACAGACCTGGTATTGTCTCCAACT 68384 Query 81 TCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAG-CCAGCCACCAACCA 129 ||| |||| | || | |||| |||||| |||||||| ||| ||| |||| Sbjct 68383 TCCTTTGGTTTGATTACCCAAAAGTCCCCCTAAGAAGTCCACAAACCTACCA 68332 >seq2046 Length=381 Score = 93.3 bits (102), Expect = 7e-17 Identities = 54/56 (96%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 326 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGGTCTGTTATTG 381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796775592522