Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1883 159 6e-37 seq109 143 5e-32 seq1572 141 2e-31 seq590 109 9e-22 seq523 95.1 2e-17 seq1551 84.2 4e-14 seq321 82.4 1e-13 seq392 78.8 2e-12 >seq1883 Length=606 Score = 159 bits (176), Expect = 6e-37 Identities = 102/111 (92%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA 242 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 606 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCA 547 Query 243 AATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||| ||| || ||||||||||| |||||||| |||||| |||| |||||| Sbjct 546 AATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 496 >seq109 Length=2288132 Score = 143 bits (158), Expect = 5e-32 Identities = 142/182 (78%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 54 TGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGC 113 ||||||| ||||||| || ||||||||||| |||| ||||||||| ||| ||| ||| Sbjct 1902503 TGTCTCACGACGGTCAAATCCCAGCTCACGCTCCCAATTAGTGGGAGAATAATTCAAAAA 1902562 Query 114 TTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACG 173 | ||| || | |||| |||| |||||||||||||| ||| ||| | ||||| || Sbjct 1902563 CTGGCGACTTTTATTTCGCAATGACAGGAAGAGCCGACACTAAAGAATC-AGAAGCAGCG 1902621 Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 || ||| |||||||| |||| ||||| ||||||||| |||||| |||||| ||||| Sbjct 1902622 TCACTAGAAACGCTTGTCTGCGACAAGTCAGTTATCC---TGGTAATGTTTCTGACACCT 1902678 Query 234 CT 235 || Sbjct 1902679 CT 1902680 >seq1572 Length=926974 Score = 141 bits (156), Expect = 2e-31 Identities = 83/86 (97%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| Sbjct 690104 ATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGTAACGTCGCTATGGACGCTTGGCTG 690045 Query 194 CCACAAGCCAGTTATCCCTGTGGTAA 219 |||||||||||||||||||||||||| Sbjct 690044 CCACAAGCCAGTTATCCCTGTGGTAA 690019 >seq590 Length=601 Score = 109 bits (120), Expect = 9e-22 Identities = 77/87 (89%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || |||||||||||||||||||||||||||||| Sbjct 86 TACTAGGTTGAATTACTATTGCGAC-ACTATCATCAGTAGGGTAAAACTAACCTGTCTCA 28 Query 61 TGACGGTCTAAACCCAGCTCACGTTCC 87 |||||||||||||||||||||||||| Sbjct 27 CGACGGTCTAAACCCAGCTCACGTTCC 1 >seq523 Length=2102221 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 202 CAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGG 261 |||||||||||||||||| ||||||| |||||||||| ||| | | | || ||||| Sbjct 457749 CAGTTATCCCTGTGGTAA-TTTTCTGACACCTCTAGCTCAAAAATAAAATGTACAAAAGG 457807 Query 262 ATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||| |||||||| |||||| |||||||||| || Sbjct 457808 ATCGGTAGGCCACGCTTTCACGGTTTGTATTTAC 457841 >seq1551 Length=855121 Score = 84.2 bits (92), Expect = 4e-14 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 116 ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTC 175 || || | || ||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 49345 ACGGACTCCTACTTCGCAATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGTC 49404 Query 176 GCTA 179 |||| Sbjct 49405 GCTA 49408 >seq321 Length=1809241 Score = 82.4 bits (90), Expect = 1e-13 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 188 TGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTT 247 |||||| |||||| ||||| |||||||||||||||||||| ||||||||| || ||| | Sbjct 580062 TGGCTGTCACAAGTCAGTTGTCCCTGTGGTAACTTTTCTGACACCTCTAG-CTTAAACTC 580120 Query 248 CGAGGGACTAAAGGATC 264 | | ||||||||||| Sbjct 580121 AAAAGTACTAAAGGATC 580137 >seq392 Length=506 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| || ||||| | || Sbjct 464 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACC 405 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | ||| || | | ||| || ||||||||||||| | |||| | | Sbjct 404 CTTGGGACCTACTTCAGCCCCAGGATGT---GATGAGCCGACATCGAGGTGCCAAACACC 348 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||| ||||| | | |||| |||||||| | ||| ||||| Sbjct 347 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854372983872