Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq392 159 7e-37 seq3145 118 2e-24 >seq392 Length=506 Score = 159 bits (176), Expect = 7e-37 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 |||||||||| | ||| |||||||||||||||||| ||||| ||||||||||||||| | Sbjct 84 GGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAG 143 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | | ||| | || | | || ||| | | || | ||||||| |||| ||| | Sbjct 144 CACGAAGGTCAGCTAATCACGGTCGGACATCGTGAGGTTAGTGCAATGGCATAAGCTGGC 203 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||||||||| | | || |||||| |||||| || | || |||||||| ||| Sbjct 204 TTGACTGCGAGAGTGACGGCTCGAGCAGGTGCGAAAGCAGGTCATAGTGATCCGGTGGTT 263 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 264 CTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATA 311 >seq3145 Length=1522 Score = 118 bits (130), Expect = 2e-24 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||||| | || |||||||||||||||||| ||||| ||||||||||||||| | Sbjct 1329 GACAGTGTATGGTTGGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGT 1270 Query 173 CCAAAGATACCCTCAGCTTGGAT--GGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 ||||| || ||||| |||||| | | || | | | | || || ||||| || Sbjct 1269 ACAAAGGTAAGCTCAGATTGGATAATAATATCAATTGTAGAATATAATGGTAAAAGCTTG 1210 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 ||||||| | | || || | |||||||||||||||| | || ||||||| | Sbjct 1209 CTTGACTGTAAGATAGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAAT 1150 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||||| | |||||| ||||||||||| ||| | ||||||| Sbjct 1149 TCTTTGTGGAAAGATTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 1101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982368936512