Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq288 143 3e-32 seq2100 122 1e-25 seq252 122 1e-25 >seq288 Length=778693 Score = 143 bits (158), Expect = 3e-32 Identities = 122/152 (80%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| |||||||| | |||||||||| | | | ||||||||||| Sbjct 421679 CGGGGTCTTTCCGTCTTGCCGCGGGTACACTGCATCTTCACAGCGAGTTCAATTTCACTG 421738 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || ||| || |||||| ||| ||||||||||||||||||||||||| Sbjct 421739 AG-TCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACC 421797 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||| Sbjct 421798 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 421829 >seq2100 Length=826 Score = 122 bits (134), Expect = 1e-25 Identities = 116/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | | |||| |||||||||| |||| | ||| ||||||| Sbjct 814 CGGGGTCTTTCCGTCTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTG 755 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || ||| |||||| |||||||||| |||||||||||||||||| Sbjct 754 AG-TCTGTATTGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACC 696 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGT 171 |||||||||||||||||||||||||||||| Sbjct 695 CGACAAGGAATTTCGCTACCTTAGGACCGT 666 >seq252 Length=912309 Score = 122 bits (134), Expect = 1e-25 Identities = 116/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | | |||| |||||||||| |||| | ||| ||||||| Sbjct 883385 CGGGGTCTTTCCGTCTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTG 883326 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || ||| |||||| |||||||||| |||||||||||||||||| Sbjct 883325 AG-TCTGTATTGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACC 883267 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGT 171 |||||||||||||||||||||||||||||| Sbjct 883266 CGACAAGGAATTTCGCTACCTTAGGACCGT 883237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547183238238