Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq2727 235 1e-59 seq2311 235 1e-59 seq2343 230 5e-58 seq3144 131 4e-28 seq610 77.0 7e-12 >seq2727 Length=321 Score = 235 bits (260), Expect = 1e-59 Identities = 154/167 (92%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| || ||||||||||| ||||| ||||||||| ||||| Sbjct 165 CTTTACAACCCGAAGGCCTTCTT-CATACACGCGGCAT-GGCTGCATCAGGCTTGCGCCC 108 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 107 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 48 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTG 167 |||| ||| ||||||||||||||||| || |||||||||||| |||| Sbjct 47 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTG 1 >seq2311 Length=627 Score = 235 bits (260), Expect = 1e-59 Identities = 205/250 (82%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 110 CTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAG 169 ||||||||||||||| ||| ||||||||||||||||| || |||||||||||| |||||| Sbjct 1 CTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAG 60 Query 170 CCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAG 229 || ||||| |||| |||||||||||| | || ||| |||||||| || |||||||||| Sbjct 61 CCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCTGATGGCAAGAGGCCCGAAG 120 Query 230 GTCCCCTGCTTTCTCCCGTAGGACG-TATGCGGTATTAGCGTCCGTTTCCGAACGTTATC 288 |||||| |||| | | |||| |||||||||||||| |||||||| |||||| Sbjct 121 GTCCCCCTCTTT-GGTCTTGCGACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATC 179 Query 289 CCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCA--AGAGAA 345 |||| | | ||||||| |||| || ||||||||||||||||||| ||| ||| | || | Sbjct 180 CCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCAAAGCA 239 Query 346 GCAAGCTTCT 355 ||||||| || Sbjct 240 GCAAGCTGCT 249 >seq2343 Length=598 Score = 230 bits (254), Expect = 5e-58 Identities = 211/261 (81%), Gaps = 8/261 (3%) Strand=Plus/Plus Query 110 CTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAG 169 ||||||||||||||| ||| ||||||||||||||||| || |||||||||||| |||| | Sbjct 1 CTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGG 60 Query 170 CCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAG 229 |||||||| | || |||||||||||| | || || ||||| ||||| | |||||||||| Sbjct 61 CCATTACCCCGCCTACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAG 120 Query 230 GTCCCCTGCTTTCTCCCGTAGGACG-TATGCGGTATTAGCGTCCGTTTCCGAACGTTATC 288 |||||| |||| | | |||| |||||||||||||| |||||||| |||||| Sbjct 121 GTCCCCCTCTTT-GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATC 179 Query 289 CCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCA--AGAGAA 345 |||| ||| | ||||||| || || ||||||||||||||||||| ||| ||| || | Sbjct 180 CCCCTCTATCGGGCAGATCCCCAGACATTACTCACCCGTCCGCCACTCGTCACCCAAGGA 239 Query 346 GCAAGCTTCTCT---CTACCG 363 ||||||| |||| |||||| Sbjct 240 GCAAGCTCCTCTGTGCTACCG 260 >seq3144 Length=3372 Score = 131 bits (144), Expect = 4e-28 Identities = 149/195 (76%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| ||| ||| |||| |||||||| |||||||| |||||||||| |||||| Sbjct 2200 CCTTCTT-CACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCC 2257 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 ||||||||||| | ||||||| |||| ||||||| ||| |||| |||||||| || Sbjct 2258 CACTGCTGCCT-TTAAAAAAGTCTGGGCCGTATCTCAGTCCCAATGTGGCTGATCATTCT 2316 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC-TAATCC 195 ||| | ||| || ||| ||| |||||| | |||| |||||||| | ||||| Sbjct 2317 TTCAAATCAGCTAAAGATAATCGGCTTGGTAGTCTATTAAACTACCAACTACCATAATCT 2376 Query 196 GACCTAGGCTCATCT 210 | || ||||||| Sbjct 2377 TGCGTAAACTCATCT 2391 >seq610 Length=3420761 Score = 77.0 bits (84), Expect = 7e-12 Identities = 53/59 (90%), Gaps = 1/59 (2%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCT 87 ||| ||| |||| |||||||| |||||||| |||||||||| ||||||||||||||||| Sbjct 325983 CACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCTGCCT 326040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071966103360