Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1573 354 3e-95 seq322 271 3e-70 seq2912 223 1e-55 seq3156 104 8e-20 >seq1573 Length=1109 Score = 354 bits (392), Expect = 3e-95 Identities = 412/544 (76%), Gaps = 19/544 (3%) Strand=Plus/Plus Query 51 CCGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATCCAGTG 109 |||| ||||| |||||| | | |||||| | | | |||||| | | | ||||| Sbjct 481 CCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTG 540 Query 110 CTCTACCTCCGG-GAAGAA-ACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCA 167 ||||||| |||| || ||| |||| | |||| |||||||| ||||||||||||||| Sbjct 541 CTCTACCCCCGGAGATGAATTCACGAGGCGCT--ACCTAAATAGCTTTCGGGGAGAACCA 598 Query 168 GCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCA 227 |||||| | ||||||||||||||||||||| | ||||| ||||||| || | |||||| Sbjct 599 GCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCA 658 Query 228 ACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAG 287 || | ||| |||||||||||||| || |||||| ||||||||||||||||| ||| Sbjct 659 ACATTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCCCATGGCTAG 718 Query 288 ATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGC 347 ||||| | ||||||||| | | ||| ||| | |||||| || |||||| |||| | Sbjct 719 ATCACCGGGTTTCGGGTCTATACCCTGCAACTTA-ACGCCCAGTTAAGACTCGGTTTCCC 777 Query 348 TACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTC 407 | ||||| ||| | || ||||||||| || ||| || || |||| | | |||| | | Sbjct 778 TGCGGCTCCCCTATAC-GGTTAACCTTGCTACAGAA-TATAAGTCGCTGACCCATTATAC 835 Query 408 AAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCAC 467 |||||| |||| ||||| | ||||| || ||||| || | ||||| | || Sbjct 836 AAAAGGTACGCAGTCACACG---CCTAA---GC----GTGCTCCCACTGCTTGTACGTAC 885 Query 468 ATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGT 526 | |||||||||| || ||||||||||| | | ||||| |||||| ||||||||||||||| Sbjct 886 ACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 945 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTC 586 ||| || | |||||||||| |||||||||||| ||| || ||||||| ||| |||| Sbjct 946 ACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTC 1005 Query 587 ACAC 590 | || Sbjct 1006 AGAC 1009 >seq322 Length=2746546 Score = 271 bits (300), Expect = 3e-70 Identities = 340/456 (75%), Gaps = 18/456 (4%) Strand=Plus/Plus Query 52 CGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTG-GGCCCCCTAGACCATCCAGTGC 110 ||| ||||| |||||| | | ||||||| | |||||||||| | | |||||| Sbjct 661154 CGGTATTCGCAGTTTGCATCGGGTTGGTAAGCCGGGATGGCCCCCTAGCCGAAACAGTGC 661213 Query 111 TCTACCTCCGG-GAAGAAA-CACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 |||||| ||| || || |||| | |||| |||||||| |||||||||||||||| Sbjct 661214 TCTACCCCCGAAGATGAGTTCACGAGGCGCT--ACCTAAATAGCTTTCGGGGAGAACCAG 661271 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228 ||||| | ||||||||||||||||||||| | ||||| ||||||| || | ||||||| Sbjct 661272 CTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAA 661331 Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288 | | ||| |||||||||||||| || |||||| ||||||||||||||||| |||| Sbjct 661332 CATTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCCCATGGCTAGA 661391 Query 289 TCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348 |||| | ||||||||| | | ||| ||| | |||||| || |||||| |||| || Sbjct 661392 TCACCGGGTTTCGGGTCTATACCCTGCAACTTA-ACGCCCAGTTAAGACTCGGTTTCCCT 661450 Query 349 ACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408 ||||| ||| | || ||||||||| || ||| || || |||| | | |||| | || Sbjct 661451 GCGGCTCCCCTATAC-GGTTAACCTTGCTACAGAA-TATAAGTCGCTGACCCATTATACA 661508 Query 409 AAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACA 468 ||||| |||| |||||| || | || | | ||||| || | ||||| | ||| Sbjct 661509 AAAGGTACGCAGTCACC-----CCCATAAAGAA----GGCTCCCACTGCTTGTACGTACA 661559 Query 469 TGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGT 503 |||||||||| || ||||||||||| | | ||||| Sbjct 661560 CGGTTTCAGGTTCTGTTTCACTCCCCTCGCCGGGGT 661595 >seq2912 Length=300 Score = 223 bits (246), Expect = 1e-55 Identities = 230/296 (78%), Gaps = 5/296 (2%) Strand=Plus/Minus Query 129 CACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGG 188 |||| | |||| |||||||| ||||||||||||||||||||| | |||||||||| Sbjct 291 CACGAGGCGCT--ACCTAAATAGCTTTCGGGGAGAACCAGCTATCTCCCGGTTTGATTGG 234 Query 189 CCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTC 248 ||||||||||| | ||||| ||||||| || | |||||||| | ||| |||||||||||| Sbjct 233 CCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACATTAGTCGGTTCGGTCCTC 174 Query 249 CACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTG 308 || || |||||| ||||||||||||||||| |||||||| | ||||||||| Sbjct 173 CAGTTAGTGTTACCCAACCTTCAACCTGCCCATGGCTAGATCACCGGGTTTCGGGTCTAT 114 Query 309 ATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTT 368 | | ||| ||| | |||||| || |||||| |||| || ||||| ||| | || |||| Sbjct 113 ACCCTGCAACTTA-ACGCCCAGTTAAGACTCGGTTTCCCTGCGGCTCCCCTATAC-GGTT 56 Query 369 AACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCAC 424 ||||| || ||| || || |||| | | |||| | ||||||| |||| ||||| Sbjct 55 AACCTTGCTACAGAA-TATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC 1 >seq3156 Length=1151 Score = 104 bits (114), Expect = 8e-20 Identities = 175/252 (69%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| || || ||||| || | |||| ||| || |||||||||| Sbjct 916 ATTCGGAGTTTCCAAGAATTTAGTAAGTTTTTACACCCCTTAGTTCAATGAGTGCTCTAC 857 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 | || || | | | ||| || | ||| |||||| ||| ||||||||||| | Sbjct 856 C-CCAAAAAAAGATTTTAAATGCTCTACTTCAATAGATTTCGTGGAAAACCAGCTATCTC 798 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 ||||||||| ||||||||| |||| ||||| ||||| || ||| | || | || Sbjct 797 TGAGTTTGATTAGCCTTTCACTCCTAACCACAAATCATCTCCATGTTTTGCCACACATGT 738 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 | ||||| ||||| | || ||||| ||||| ||| ||||| ||||||||| Sbjct 737 GAGTTCGATCCTCTAAATAGTTTTACCTATTTTTCAATCTGTTCATGGTTAGATCACTCA 678 Query 296 GCTTCGGGTCTT 307 | |||||||||| Sbjct 677 GTTTCGGGTCTT 666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817542527488