Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq2727 159 7e-37 seq3144 113 9e-23 >seq2727 Length=321 Score = 159 bits (176), Expect = 7e-37 Identities = 115/133 (86%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||||||||||| || | ||||||||||||||| ||||||||||||||||||||| Sbjct 133 GGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 74 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| |||||| | ||| |||||||| || |||| ||| Sbjct 73 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGAT 14 Query 121 CGTCGGCTTGGTG 133 ||||| || |||| Sbjct 13 CGTCGCCTAGGTG 1 >seq3144 Length=3372 Score = 113 bits (124), Expect = 9e-23 Identities = 141/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||| | |||| | |||||| ||| || |||||||||||||| | ||||| Sbjct 2222 GCTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCTGCCTTTAAAAA-AGTCT 2280 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||| |||||||||||||||||| | ||| || ||| | |||| ||| |||| Sbjct 2281 GGGCCGTATCTCAGTCCCAATGTGGCTGATCATTCTTTCAAATCAGCTAAAGATAATCGG 2340 Query 127 CTTGGTGGGCTATTATCTCACCAACTACC-TAATCGGCCGCGAGCCCATCTTTCAGCG-- 183 |||||| | |||||| |||||||||| ||||| || | | ||||||| | || Sbjct 2341 CTTGGTAGTCTATTAAACTACCAACTACCATAATCTTGCGTAAACTCATCTTTTAACGTT 2400 Query 184 ATAAATCTTT 193 |||| |||| Sbjct 2401 TTAAAACTTT 2410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998368430592