Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1573 226 7e-57 seq3156 107 5e-21 >seq1573 Length=1109 Score = 226 bits (250), Expect = 7e-57 Identities = 299/407 (73%), Gaps = 12/407 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| |||||||||| | | || ||| | Sbjct 29 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGA 88 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | ||||||||||| ||||| |||| || |||||| | || |||| ||| | Sbjct 89 CAGGAACCCTTGGTCTTCCGGCGAGCGGGCTTTTCACCCGCTTTATCGTTACTTATGTCA 148 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTC-ACCACTGACAC 177 |||||| |||| | || | ||||| || | |||| || |||| || || ||| Sbjct 149 GCATTCGCACTTCTGAT-ACCTCCAGCATGCC-TCACAGCACACCTTCGACGGCTTACAG 206 Query 178 GACGCTCCCCTACCCAACCACACAG------GTTGCCACAGCTTCGGCGGATAACTTAAG 231 ||||||||||||||||| ||||| | |||| ||||||||| | || ||| | Sbjct 207 AACGCTCCCCTACCCAACAACACATAGTGTCGCTGCCGCAGCTTCGGTGCATGGTTTA-G 265 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| ||||| || |||| | ||| ||||||||||||||||||| ||||| || Sbjct 266 CCCCGTTACATCTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAAT 325 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 |||||||||||| |||||||| |||||| ||||| || ||||||| ||||||||| Sbjct 326 GATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGTGCCTTCCCACATCGTTTCCCACTT 385 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | || |||| ||| ||||||||| | |||||| ||||||||||| Sbjct 386 AACCATGACTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 432 >seq3156 Length=1151 Score = 107 bits (118), Expect = 5e-21 Identities = 130/173 (75%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 226 CTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCT 285 |||||| | || |||||| | ||||| || ||| ||||| ||||||||||||| ||| Sbjct 1143 CTTAAGTCTCGATACATTTTAGGCGCAAAAAAACTAGACCAATGAGCTATTACGCTTTCT 1084 Query 286 TTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTC 345 || |||| |||||||||||||||| |||| |||||||| | || |||||| Sbjct 1083 TTAAAGGGTGGCTGCTTCCAAGCCTACCTGTTGGTTGTCATGATTTTTTTACTTCCTTTT 1024 Query 346 CCACTGAG-TCACCACTTAGGGGCCTTAGCTGAT-GATCTGGGCTGTTTCCCT 396 |||| || | | |||| | ||||||| ||| ||||||||||||||||| Sbjct 1023 TCACTTAGAATATTATTTAGAGACCTTAGC-GATCAATCTGGGCTGTTTCCCT 972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177562764288