Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2369 129 6e-28 seq2138 125 7e-27 >seq2369 Length=603 Score = 129 bits (142), Expect = 6e-28 Identities = 136/177 (77%), Gaps = 8/177 (5%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCAT 69 ||||| |||||||||||||| ||| ||||||||| || |||| |||||||||| ||| Sbjct 208 TTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTAGCTCATTTGAATACATTAGCAT 267 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 ||||||||| ||| ||| | | |||||||||| ||||| | | | ||||||| Sbjct 268 GGAATAATAAGATATGACTTTGG--TCTATTTTGTTGGTTTGCACACCAGA--GTAATGA 323 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | |||| ||| ||| |||||| | |||| | |||| ||||||||||||||||| Sbjct 324 TTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGAT 380 >seq2138 Length=593 Score = 125 bits (138), Expect = 7e-27 Identities = 137/178 (77%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||||| Sbjct 201 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGG 260 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| || || | ||| || |||||||| | Sbjct 261 ATAACATCATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGA-GTAATGATTA 318 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 319 ACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511984316480