Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq392 178 2e-42 seq3145 167 4e-39 seq395 145 1e-32 >seq392 Length=506 Score = 178 bits (196), Expect = 2e-42 Identities = 125/143 (87%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 133 CCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAA 192 || |||| | ||| |||||||| | |||||||||||||||||||| ||||||||| || Sbjct 504 CCCCTCAGTTCTCCAGCGCCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTAAA 445 Query 193 CCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCC 252 |||||||||||| || |||||| ||||||||||| ||||||||||||||||||||||| Sbjct 444 CCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCTACTTCAGCCC 385 Query 253 CAGGATGAGACGAGCCGACATCG 275 ||||||| || |||||||||||| Sbjct 384 CAGGATGTGATGAGCCGACATCG 362 >seq3145 Length=1522 Score = 167 bits (184), Expect = 4e-39 Identities = 194/260 (75%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||||||||| |||||| ||| |||||| | | || |||| ||| | Sbjct 794 CTTAGATGCCTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGCTTTTGAAA- 852 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 |||| | | |||||||| ||| || || || ||||||||||||| | || | || Sbjct 853 --CAACCGATACACCAGAGATTTACCCTTCTCGATCCTCTCGTACTAGAGTTAGATTCTT 910 Query 137 TCAAATTTCCTACGCCCACGACG-GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||| |||| | | | |||||| ||| ||||||||| ||||||||| ||||| Sbjct 911 TCATTTTTCAAAATATCTATAGAAGATAGGAACCAAACTGTCTCACGACGTTCTAAACCC 970 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| |||| Sbjct 971 AACTCACGTACCACTTTAATTGGCGAACAGCCAAACCCTTGGAACCTTCTTCAGCTCCAG 1030 Query 256 GATGAGACGAGCCGACATCG 275 |||| || ||| |||||||| Sbjct 1031 GATGTGATGAGTCGACATCG 1050 >seq395 Length=1613 Score = 145 bits (160), Expect = 1e-32 Identities = 139/178 (78%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| |||||||||| |||||| |||||| ||||| | |||||| || || ||| | Sbjct 1436 TTCGTGCTTAGATGCTTTCAGCACTTATCTCTTCCGCATTTAGCTACCGGGCAGTGCCAT 1495 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 ||||| ||||| | |||||| | | ||||| ||||||||||||||||| | ||| Sbjct 1496 TGGCATGACAACCCGAACACCAGTGATGCGTCCACTCCGGTCCTCTCGTACTAGGAGCAG 1555 Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTC 188 | || |||| | ||| |||||||| | |||||||||||||||||||| |||||||| Sbjct 1556 CCCCCCTCAGTTCTCCAGCGCCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTC 1613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780776082632