Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq2311 489 4e-136 seq2343 486 5e-135 seq2727 304 3e-80 seq3144 127 5e-27 >seq2311 Length=627 Score = 489 bits (542), Expect = 4e-136 Identities = 291/304 (96%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 111 CTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGG 170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 CTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAG 60 Query 171 CCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAG 230 || ||||||| || |||||||||||||||||||| |||| ||| | |||||||||||| Sbjct 61 CCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCTGATGGCAAGAGGCCCGAAG 120 Query 231 GTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCC 290 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 121 GTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCC 180 Query 291 CCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAG 350 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 181 CCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCAAAGCAG 240 Query 351 CAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATC 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATC 300 Query 411 TGAG 414 |||| Sbjct 301 TGAG 304 >seq2343 Length=598 Score = 486 bits (538), Expect = 5e-135 Identities = 290/304 (95%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 111 CTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGG 170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGG 60 Query 171 CCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAG 230 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCATTACCCCGCCTACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAG 120 Query 231 GTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCC 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCC 180 Query 291 CCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAG 350 ||||| ||| ||||| | ||||||||||||||||||||||||||||||||| | ||| || Sbjct 181 CCCTCTATCGGGCAGATCCCCAGACATTACTCACCCGTCCGCCACTCGTCACCCAAGGAG 240 Query 351 CAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATC 410 |||||| || || |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 241 CAAGCTCCTCTGTGCTACCGTCCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATC 300 Query 411 TGAG 414 |||| Sbjct 301 TGAG 304 >seq2727 Length=321 Score = 304 bits (336), Expect = 3e-80 Identities = 168/168 (100%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 168 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 109 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 108 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 49 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTG 168 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTG 1 >seq3144 Length=3372 Score = 127 bits (140), Expect = 5e-27 Identities = 147/194 (76%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | |||||||||| ||| ||| || |||| |||| |||| ||| || Sbjct 2183 CTTTACAACCTAATTAGCCTTCTTCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 2242 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||||||| |||| ||||||| ||| | Sbjct 2243 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTCTGGGCCGTATCTCAGTCCCAAT 2301 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| | |||||| ||| ||| || ||| | | |||| | | Sbjct 2302 GTGGCTGATCATTCTTTCAAATCAGCTAAAGATAATCGGCTTGGTAGTCTATTAAACTAC 2361 Query 183 CAACTAGC-TAATC 195 |||||| | ||||| Sbjct 2362 CAACTACCATAATC 2375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222361347712