Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq2727 269 8e-70 seq3144 232 2e-58 seq2311 91.5 4e-16 seq2343 77.0 1e-11 >seq2727 Length=321 Score = 269 bits (298), Expect = 8e-70 Identities = 251/321 (78%), Gaps = 26/321 (8%) Strand=Plus/Plus Query 195 ACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACA 254 ||| ||||||||||| |||| | |||||||| ||| | |||||| ||||||||||||| Sbjct 2 ACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACA 61 Query 255 CGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314 ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 62 CGGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGA 121 Query 315 TGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTC---AAG 371 |||||| | |||||||| || |||||||||||||| |||||| || || | || Sbjct 122 TGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGAG 181 Query 372 GAAG------------ATAA----------TGACGGTACTTGAGGAGGAAGCCCCGGCTA 409 |||| |||| ||||| ||| | || ||||| ||||||| Sbjct 182 GAAGGCGACGGGGTTAATAACCCTGTCGATTGACGTTACCCGCAGAAGAAGCACCGGCTA 241 Query 410 ACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGG 469 ||| |||||||||||||||||||||||| |||| || ||||||| |||||||||| ||| Sbjct 242 ACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACT-GGG 300 Query 470 CGTAAAGGGTGCGTAGGTGGT 490 ||||||| | || ||| ||| Sbjct 301 CGTAAAGCGCACGCAGGCGGT 321 >seq3144 Length=3372 Score = 232 bits (256), Expect = 2e-58 Identities = 258/337 (77%), Gaps = 7/337 (2%) Strand=Plus/Minus Query 167 GATTA-GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 ||||| | ||||||||| ||| | ||||||| ||| ||| |||| || ||| | Sbjct 2375 GATTATGGTAGTTGGTAGTTTAATAGACTACCAAGCCGATTATCTTTAGCTGATTTGAAA 2316 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 | ||||| |||||||||| ||||||| |||| ||| ||| | |||||||||||| Sbjct 2315 GAATGATCAGCCACATTGGGACTGAGATACGGCCCAGACTTTTTTAA-AGGCAGCAGTGG 2257 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC-C 344 ||||| ||| |||||| || ||||| |||| |||||| ||| ||||| || |||||| Sbjct 2256 GGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACCGAGTGAGTGAAGAAGGCTA 2197 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCC 404 | ||| |||||||||| || | ||||| || |||||| |||||| | | |||| || Sbjct 2196 ATTAGGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAAAAGAAGTTCC 2137 Query 405 GGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||| || |||||||||||||||||||||||| || || ||| |||| |||||| Sbjct 2136 GGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGAGCGAGCATTATTCGGAATG 2078 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | | ||||||||| || ||||||||||| |||||| Sbjct 2077 A-TTAGGCGTAAAGAGTTTGTAGGTGGTTTTTTAAGT 2042 >seq2311 Length=627 Score = 91.5 bits (100), Expect = 4e-16 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 ||||||||||| ||| |||||||||| ||| ||||||||||| |||| | ||||||| Sbjct 85 GATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAG 26 Query 227 GGTGATCGGCCACATTGGAACTGAG 251 | ||| | |||||| |||||||||| Sbjct 25 GATGACCAGCCACACTGGAACTGAG 1 >seq2343 Length=598 Score = 77.0 bits (84), Expect = 1e-11 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 ||||||||||| || ||||| ||| ||| ||||||||||| |||| | ||||||| Sbjct 85 GATTAGCTAGTAGGCGGGGTAATGGCCCACCTAGGCGACGATCCCTAGCTGGTCTGAGAG 26 Query 227 GGTGATCGGCCACATTGGAACTGAG 251 | ||| | |||||| |||||||||| Sbjct 25 GATGACCAGCCACACTGGAACTGAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497552645888