Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq2253 196 1e-47 seq3144 172 1e-40 seq2727 114 3e-23 >seq2253 Length=601 Score = 196 bits (216), Expect = 1e-47 Identities = 178/223 (80%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 186 GTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAG 245 || ||||||| |||||||||||||||||||||| || ||||||| ||| ||||||||| Sbjct 591 GTAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAG 532 Query 246 GCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTA 305 ||||| |||||| |||||| || ||| ||||||||||||||||||||||||||| Sbjct 531 GCGGCCCCCTGGACAAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACAGGATTA 472 Query 306 GATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCT 365 ||||||||||||||||||||||||||||||| ||| || | | || | | || || Sbjct 471 GATACCCTGGTAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAG-GCG 413 Query 366 CCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | ||| ||| ||||| ||||| || ||||||||||| Sbjct 412 TGGCTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTA 370 >seq3144 Length=3372 Score = 172 bits (190), Expect = 1e-40 Identities = 250/347 (72%), Gaps = 6/347 (2%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGG 58 ||||| | | |||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 2155 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 2097 Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAG 118 || ||| |||| |||||| | | ||||||||| || ||||||||||| |||||| | Sbjct 2096 GCGAGCATTATTCGGAATGATTAGGCGTAAAGAGTTTGTAGGTGGTTTTTTAAGTTGAAA 2037 Query 119 GTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGG- 177 | | | || ||||||| | ||| |||||| || |||| | Sbjct 2036 GGAACAAATTAGAGCTCAACTTTATATATTTTTTCAAAACTGAGAAACTCGAGTATAAAT 1977 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || | ||||||| ||| || || | | |||| ||| |||| ||| ||||| | || Sbjct 1976 AGAGGATAATGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAAGATCAA 1917 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTA-ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296 ||||||||| | |||| | || |||||||||||| ||||||| |||| ||| | Sbjct 1916 AGGCGAAGGCAATTATCTGGG-TATATACTGACACTGAGAAACGAAAGCTTGGGTAGCGA 1858 Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 || ||||||||||||| ||||||||| || ||||||||||| | ||| Sbjct 1857 ACGGGATTAGATACCCCGGTAGTCCATGCTGTAAACGATGAGTGCTA 1811 >seq2727 Length=321 Score = 114 bits (126), Expect = 3e-23 Identities = 83/96 (86%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || ||||| |||||||||| |||||||||||||||||||||||| |||| || ||||||| Sbjct 226 GAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTA 285 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104 |||||||||||||||||||| | || ||| ||| Sbjct 286 ATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGT 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203161954816