Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2011 251 1e-64 seq2046 215 1e-53 seq322 140 6e-31 seq442 138 2e-30 seq1884 98.7 2e-18 seq468 95.1 2e-17 seq523 77.0 6e-12 >seq2011 Length=380 Score = 251 bits (278), Expect = 1e-64 Identities = 185/214 (86%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 115 CAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGA 174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 CAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTA 60 Query 175 GCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGC 234 |||||||| || ||||||||| ||| | ||| |||||| | ||| | ||||| Sbjct 61 TTCAACGAGTATATAGCCTTGGCCGACAGGCCCGGGAAATCTT-TGAAATTTCATCGTGA 119 Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 |||||||||| |||||||||| ||| |||| |||||||||| ||||||||||||| |||| Sbjct 120 TGGGGATAGATCATTGCAATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGCGAGTCA 179 Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| |||||||| ||||||||||||||||||| Sbjct 180 TCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 213 >seq2046 Length=381 Score = 215 bits (238), Expect = 1e-53 Identities = 176/214 (82%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 115 CAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGA 174 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 381 CAATAACAGACCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCG 322 Query 175 GCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGC 234 |||||||| || |||||| || |||||||||||||||||| || |||||| Sbjct 321 TTCAACGAGTATATAACCTTGATCGATAGGTCTGGGTAATCTTGTGAATGCGCATCGTGC 262 Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 | |||||||| |||||||| | |||| |||||||||| |||||||| || |||| Sbjct 261 TAGGGATAGACTGTTGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAATGCAAGTCA 202 Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||||||||||||||||||||||||||| Sbjct 201 TCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTA 168 >seq322 Length=2746546 Score = 140 bits (154), Expect = 6e-31 Identities = 177/242 (73%), Gaps = 11/242 (5%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||| ||||||||| | | | ||| || | | ||| | ||||||| | |||| || Sbjct 2616253 CTTCTAAGAGGGACTTTTGAGTAATCAAACCAAAGAAAGCTGTAGGCAATGATAGGTGTG 2616194 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||| |||||||||| ||||||||||||||||||||||||| |||||||| | Sbjct 2616193 -GATATCCTTAGATGTACTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATAC 2616135 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 ||||||| || |||||||||||||||||| || | ||| ||| |||||||| | Sbjct 2616134 CACCTTGATCGATAGGTCTGGGTAATCTTGTGAACGCGTATCGCGCTAGGGATAGACTGT 2616075 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||| |||| |||||||||| |||| || || ||||||||| |||||| Sbjct 2616074 TGCA-------GTCTTGAACGAGGAATTCCTAAGAATTGCAAGTCATCAGCTTGCGTTGT 2616022 Query 309 TT 310 || Sbjct 2616021 TT 2616020 >seq442 Length=1242542 Score = 138 bits (152), Expect = 2e-30 Identities = 115/140 (82%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| | || |||| || | ||||||| ||||||||||||| |||| Sbjct 804716 CTTCTTAGAGGGACTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGACCTGT 804657 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 804656 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATCTA 804597 Query 190 ACCTTGGCCGGAAGGTCTGG 209 |||||| || |||||||| Sbjct 804596 ACCTTGATCGATAGGTCTGG 804577 >seq1884 Length=313614 Score = 98.7 bits (108), Expect = 2e-18 Identities = 99/127 (78%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||| |||||| | || | ||| || | ||||||| ||| ||||| |||||||| Sbjct 68347 CTTCTTAGGGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGACAATACCAGGTCTG 68406 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||||| ||||||| |||| ||||||| |||||| || | |||||||| || Sbjct 68407 TGATGCCCTAAGATGTTATGGGTCGCACGCACGCTACTACGA-TGCTTCAACGAGTATAT 68465 Query 189 CACCTTG 195 |||||| Sbjct 68466 AACCTTG 68472 >seq468 Length=1367571 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 || |||||||| |||||||| || ||| | |||||||| ||||||||| || || Sbjct 1243873 CTAGGGATAGACAGTTGCAATTTTTAGTCTAGAGCGAGGAATTCCTAGTAAGTGCAAGTA 1243932 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||| ||||||||| |||||||||||||||||| Sbjct 1243933 ATCAGCTCGCGTTGATAACGTCCCTGCCCTTTGTA 1243967 >seq523 Length=2102221 Score = 77.0 bits (84), Expect = 6e-12 Identities = 113/160 (71%), Gaps = 10/160 (6%) Strand=Plus/Minus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 || || |||| |||||||||||||||||||||||||| |||| |||| ||| Sbjct 1408158 AAATTGGAGGTAATAACAGGTCTGTGATGCCCTTAGA---------CCGCTCGCGTGCTC 1408108 Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 |||||| | |||||| || | ||| || ||||| ||||||||||| || Sbjct 1408107 CACTGATGAATTTAACGAGCATATAAAATTGATCGATGGGTCTAGGTAATCTTGTGAATG 1408048 Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 ||||||| || ||||| |||||||| ||| |||| Sbjct 1408047 CGCATCGTGCTAGGAATAGACTGTTGCAATTTTTG-TCTT 1408009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947170049536