Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1883 589 7e-166 seq3053 385 2e-104 seq3090 268 3e-69 seq666 149 2e-33 seq286 134 5e-29 seq2589 114 4e-23 seq2183 109 2e-21 seq6 109 2e-21 seq321 98.7 3e-18 seq3042 96.9 1e-17 seq322 86.0 2e-14 >seq1883 Length=606 Score = 589 bits (652), Expect = 7e-166 Identities = 412/465 (89%), Gaps = 7/465 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || |||||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 462 CTTCTGTTCTACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 403 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 402 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 343 Query 127 GGCCCGCGAAGGA---CCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCA 182 | ||||| ||| |||| ||| ||| || || | | || | ||||| |||| Sbjct 342 GACCCGCCGAGGCGGGCCTTGGGTCCAAAAAGAGG--GGCGTTGCCCCGCTTCCGATTCA 285 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 || ||||||||| |||| ||| ||||||||||||||||| |||| | |||||||| Sbjct 284 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCCGAG-GGCTCCCA 226 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 CTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 166 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 165 CTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA 106 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 105 GACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 46 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 467 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 45 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 1 >seq3053 Length=362 Score = 385 bits (426), Expect = 2e-104 Identities = 254/280 (91%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTAT 247 ||||||||| ||| | ||||||||||||||| || | || | ||||||||||| Sbjct 85 TAAGTAAAACAACATTGGAAGTAGTGGTATTTCACGGACGGCAAAGC--CTCCCACTTAT 142 Query 248 TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCT 307 |||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 143 TCTACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCT 202 Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 ||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 203 TTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAG 262 Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTT 427 |||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| Sbjct 263 GGACAGTGGGAATCTCATTTATCCATTCATGCGCGTCACTAGTTAGATGACGAGGCATTT 322 Query 428 GGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 467 |||||||||||||||||||||||||||||||||||||||| Sbjct 323 GGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 362 >seq3090 Length=915709 Score = 268 bits (296), Expect = 3e-69 Identities = 213/255 (84%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTAT 247 ||||||||| ||| || |||||||| || ||| || | || | ||||||||||| Sbjct 454021 TAAGTAAAACAACATTAGAAGTAGTGGTTTTACACGGACGGCAAA--GTCTCCCACTTAT 453964 Query 248 TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCT 307 | |||||| ||||||||||| |||| ||| | ||||||||||||||||||||||||||| Sbjct 453963 TTTACACCGATCAAGTCATTTTACAACGTCAGGCTAGAGTCAAGCTCAACAGGGTCTTCT 453904 Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 |||||||||| || |||| ||||||||||||||||| | |||||||| ||| ||||| Sbjct 453903 TTCCCCGCTGCTTATTCCAAACCCGTTCCCTTGGCTGTAGGCTCGCTAGACAGTCGATAG 453844 Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTT 427 |||||| ||||||||| |||||||||||||||||||||||| ||||| |||| ||||| | Sbjct 453843 GGACAGCGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGAAGACGGGGCATAT 453784 Query 428 GGCTACCTTAAGAGA 442 || ||||| || ||| Sbjct 453783 GGTTACCTCAAAAGA 453769 >seq666 Length=329719 Score = 149 bits (164), Expect = 2e-33 Identities = 90/95 (95%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 331 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATC 390 |||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| Sbjct 153161 CGTTCCCTTGGCTGTGAATTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCATTAATC 153102 Query 391 CATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||| |||||||||||||||| Sbjct 153101 CATTCATGCGCGTCACTAGTTAGATGACGAGGCAT 153067 >seq286 Length=985874 Score = 134 bits (148), Expect = 5e-29 Identities = 80/84 (95%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 450 TTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTG 509 ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 808360 TTACTCCCGCCGTTTACCCGCGCTTGGTTAAATTTCTTCGCTTTGACATTCAGAGCACTG 808419 Query 510 GGCAGAAATCACATTGCGTCAACA 533 |||||||||| ||||| ||||||| Sbjct 808420 GGCAGAAATCGCATTGTGTCAACA 808443 >seq2589 Length=604050 Score = 114 bits (126), Expect = 4e-23 Identities = 65/66 (98%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 468 CGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCG 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 272975 CGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTG 272916 Query 528 TCAACA 533 |||||| Sbjct 272915 TCAACA 272910 >seq2183 Length=316 Score = 109 bits (120), Expect = 2e-21 Identities = 62/63 (98%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCA 60 Query 531 ACA 533 ||| Sbjct 61 ACA 63 >seq6 Length=2952 Score = 109 bits (120), Expect = 2e-21 Identities = 63/65 (97%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTA 60 Query 531 ACATC 535 |||| Sbjct 61 GCATC 65 >seq321 Length=1809241 Score = 98.7 bits (108), Expect = 3e-18 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 1304686 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 1304627 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCC 100 | ||| ||||| ||||||||||||| | |||| Sbjct 1304626 ATATAAAAGATGCGCCGCCCCAGCCACCCCCCCC 1304593 >seq3042 Length=3267112 Score = 96.9 bits (106), Expect = 1e-17 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 375 GGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 3205717 GGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGATGACGAGGCATTTGGCTA 3205660 >seq322 Length=2746546 Score = 86.0 bits (94), Expect = 2e-14 Identities = 199/293 (68%), Gaps = 14/293 (5%) Strand=Plus/Minus Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||| | ||||||||| ||||| ||||||| ||| ||| || | | || ||| Sbjct 2221120 ACTTTATGTACACCTCTTGAGTCAATTCACAACGTCTGACAAGTCTAA---TC----GGG 2221068 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 |||||| | || | ||| ||| || |||| |||| |||| |||||| ||| Sbjct 2221067 TCTTCTATTCCATC-GATCAATCCATGCTCGTTTTCTTGATTGTGAGCCTGCTAGACAGT 2221009 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 | | ||| |||| | ||| || | ||||||| ||||| | | | ||||| |||||| Sbjct 2221008 AAAATGGGTCAGTAGAAATGTCACTTATCCATTAATGCGTATTGCAAGTTAGAAGACGAG 2220949 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 ||||||||||| | | || | | |||| | ||||| ||| | ||| | | || | Sbjct 2220948 GCATTTGGCTA-GTCAGGAAA---AAAGTT-GTTCCGCCATTTTCTCGCACGTACTTATA 2220894 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 |||| | |||||| || ||| | | || |||||| ||||| | |||||| Sbjct 2220893 TTTCCT-ACTTTGTCAATCACTATAATTGGAAGAAATTGCATTGTGCCAACAT 2220842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635148294976