Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq288 215 2e-53 seq252 178 4e-42 seq2100 168 2e-39 seq392 116 1e-23 >seq288 Length=778693 Score = 215 bits (238), Expect = 2e-53 Identities = 218/284 (77%), Gaps = 11/284 (4%) Strand=Plus/Plus Query 281 CAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTA 339 ||||||||||| ||||| | |||||||||| |||| ||||||| | | ||||||| | Sbjct 421659 CAAGCTATAGTAAAGGTTCACGGGGTCTTTCCGTCTTGCCGCGGGTACACTGCATCTTCA 421718 Query 340 CTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTC 399 | | | ||||||||| | | || ||| |||||||| || || ||||||||||| Sbjct 421719 CAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCATCATTACGCCATTC 421778 Query 400 GTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCA 459 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 421779 GTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGG 421838 Query 460 CCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTC 519 ||||||||||| |||||||| || | || || | || ||| || Sbjct 421839 CCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC----------TTGCGCTAACCCCAT 421888 Query 520 CTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTC 563 | |||||||||| ||||||||||||||||| |||||||| || Sbjct 421889 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTC 421932 >seq252 Length=912309 Score = 178 bits (196), Expect = 4e-42 Identities = 230/321 (72%), Gaps = 20/321 (6%) Strand=Plus/Minus Query 244 CCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGG 302 |||| ||| ||||||| | | ||| ||||| ||| | |||| ||||| | ||| Sbjct 883442 CCACTTATACTACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGG 883383 Query 303 GGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGC 362 ||||||| |||| | ||| ||||||| || || | ||| ||||| | | Sbjct 883382 GGTCTTTCCGTCTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTGAGT 883323 Query 363 CTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGAC 422 |||| | |||||||| ||| |||||||| |||||| |||||||||||||||||||||| Sbjct 883322 CTGTATTGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGAC 883263 Query 423 AAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAAT 482 |||||||||||||||||||||| || | |||||| ||||||||||||||| ||||||| Sbjct 883262 AAGGAATTTCGCTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCAAT 883203 Query 483 TACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGC 542 | | || || || | |||||| ||||||||||||||| Sbjct 883202 T-------------------TAATGCGCAAACATTTTTTCTTAATCTTCCAGCACCGGGC 883162 Query 543 AGGCGTCAGTCCGTATACCTC 563 ||| ||||| || ||||| || Sbjct 883161 AGGTGTCAGACCCTATACATC 883141 >seq2100 Length=826 Score = 168 bits (186), Expect = 2e-39 Identities = 201/276 (73%), Gaps = 20/276 (7%) Strand=Plus/Minus Query 289 AGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACT 347 ||| ||||| | |||||||||| |||| | ||| ||||||| || || | Sbjct 826 AGTAAAGGTTCACGGGGTCTTTCCGTCTAACTATAGAAAATCCGCATCTTCACGGATAAT 767 Query 348 GCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGT 407 ||| ||||| | | |||| | |||||||| ||| |||||||| |||||| ||||||| Sbjct 766 TCAAATTCACTGAGTCTGTATTGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGT 707 Query 408 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTT 467 ||||||||||||||||||||||||||||||||||||| || | |||||| |||||||| Sbjct 706 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCAGAGTTACGGCCGCCGTT 647 Query 468 TACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAAC 527 ||||||| |||||||| | || || || | |||||| Sbjct 646 TACTGGGACTTCAATT-------------------TAATGCGCAAACATTTTTTCTTAAT 606 Query 528 CTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTC 563 |||||||||||||||||| ||||| || ||||| || Sbjct 605 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATC 570 >seq392 Length=506 Score = 116 bits (128), Expect = 1e-23 Identities = 144/192 (75%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 13 TCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGAG 72 |||||||||||||| ||| ||| || |||| ||| | ||| || ||| | | || Sbjct 215 TCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCGACCGTGATTAG 156 Query 73 GGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCA 132 ||||| | || |||||||||| ||| ||||| | |||||||||| |||||||||| Sbjct 155 CTGACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAGTCAAACTACCCA 97 Query 133 CCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAG-ATATCCACTACGGT-CAGA 190 |||| |||||||| || ||| ||||| ||||| | ||||| | ||| | || | || Sbjct 96 CCAGACACTGTCCGCAGCCCGGATCACGGGCCTACGTTAGAACATCAA--ACATTAAAGG 39 Query 191 GTGGTATTTCAA 202 |||||||||||| Sbjct 38 GTGGTATTTCAA 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702346170112