Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2695 610 2e-172 seq1572 347 4e-93 seq3005 266 1e-68 seq252 163 9e-38 seq53 150 5e-34 seq3090 96.9 1e-17 seq3101 87.8 5e-15 seq468 75.2 3e-11 >seq2695 Length=2134 Score = 610 bits (676), Expect = 2e-172 Identities = 447/513 (87%), Gaps = 11/513 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | | |||||| |||| |||||||||||||||||| Sbjct 84 GTACTCATTCCAATTACCAGACTCGTATGAGCCCGGTATTGTTATTTATTGTCACTACCT 143 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 144 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 203 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||| Sbjct 204 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTA 263 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 264 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 323 Query 241 CAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG----AAG--GG 293 ||| |||| |||||| ||| |||||| |||||||| | | ||| || ||| | Sbjct 324 CAAGGGCCGTGCGATCCGTCGAGTTATCATGAATCATC--GCAGCAACGGGCAAAGCCCG 381 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 382 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 441 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| ||| ||| |||||| |||| |||||||| Sbjct 442 AGCTCTAGAATTACTACGGTTATCCGAGTAGCAAGATACCATCAAACAAACTATAACTGA 501 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | | ||| | ||||||| |||||||||||| Sbjct 502 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTTGTTCATACTTACACATGCATGGCT 561 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 562 TAATCTTTGAGACAAGCATATGACTACTGGCAG 594 >seq1572 Length=926974 Score = 347 bits (384), Expect = 4e-93 Identities = 392/516 (76%), Gaps = 37/516 (7%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||| ||||| | ||| | || ||||| | || |||||| ||||||| || Sbjct 224165 GTTCTCATTTCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATTTACTGTCACTGCC 224223 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 | || ||||| ||||||||||||| |||||||| ||||||||||||||||||||| || Sbjct 224224 TTCCTGTGTCATGATTGGGTAATTTACGCGCCTGTTGCCTTCCTTGGATGTGGTAGG-GT 224282 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 || ||| | | || |||||| | |||||||||| || ||||||| Sbjct 224283 TT---AGGGTT----TAGGGT---------TAATTCTCTGTTACCCGTTAATGCCATGGT 224326 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| ||||||||||| |||| |||||||||||||| | | || ||||| || Sbjct 224327 AGGCCCATATCCTACCATTAAAAGCTGATAGGGCAGAAACTCAACCGATTTATCGC--GC 224384 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCC---CCGAAGG--GC 294 ||| ||||| || ||||||||||| ||| ||| ||| |||||| || Sbjct 224385 AAAAGC----GCGATCCGCACAGTTATTATGATTCAACAAAATGCCAGCCCGAAGACTGC 224440 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGT 349 ||| ||| ||||||||||| ||| |||| ||| ||| |||| |||||| Sbjct 224441 ATTGATTTCA-ATCTAATAAATGATACCCGCCCGACAAACAGTTGGGTTTTTATGCATGT 224499 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||||| ||| ||||||| |||||||||||||||| | | || ||||| Sbjct 224500 ATTAGCTCTAGAATTACTACGATTATCCAAGTAGTAAGGTACTATCGAGTGGACTATAAC 224559 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGT-ATAGATTGCTTATACTTAGACATGCATG 468 |||| ||||||||||||||||||||||| || | | | || || |||||||||||||||| Sbjct 224560 TGATATAATGAGCCATTCGCAGTTTCACAGTAAAAAAATGTTTGTACTTAGACATGCATG 224619 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| ||||||||||||||| Sbjct 224620 GCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 224655 >seq3005 Length=307 Score = 266 bits (294), Expect = 1e-68 Identities = 251/314 (80%), Gaps = 17/314 (5%) Strand=Plus/Minus Query 68 TCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGG 127 || |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| Sbjct 307 TCAGGATTGGGTAATTTACGCGCATGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTAAGG 248 Query 128 CTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACT 187 |||||||||||||||| |||||||||||||||||||||||| || |||||||||||| | Sbjct 247 CTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAATGCCATGGTAGGCCCAT 188 Query 188 ATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCC 247 ||||||||||| |||| |||||||||||||| | | || ||||| || ||| Sbjct 187 ATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGATTTATCGC--GCAAAAG--- 133 Query 248 ATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC--CCCGAAG--GGCGTTGGTTT 302 ||||| || ||||||||||| ||| || | | | ||||||| || |||| || Sbjct 132 -CGCGATCCGCACAGTTATTATGATTCAACACAATACCAGCCCGAAGACTGCATTGG-TT 75 Query 303 TTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGTATTAGCTC 357 | ||||||||||| | ||| |||| ||| ||| ||| |||||||||||||| Sbjct 74 TCAATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTATTTATGCATGTATTAGCTC 15 Query 358 TAGAATTACCACGG 371 ||||||||| |||| Sbjct 14 TAGAATTACTACGG 1 >seq252 Length=912309 Score = 163 bits (180), Expect = 9e-38 Identities = 171/223 (77%), Gaps = 15/223 (7%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| | || ||||| | || ||| | ||||||||||| Sbjct 177804 GTTCTCATTCCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATATGTTGTCACTACC 177746 Query 60 T----CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115 ||| ||||| |||||| ||||||||||||||||||||||||||||| Sbjct 177745 AACCACCCTGTGTCAGGATTG---------CGCGCCTGCTGCCTTCCTTGGATGTGGTAA 177695 Query 116 CCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCA 175 ||||| ||||| || |||||| |||||||||||||||||||||| | || ||| Sbjct 177694 CCGTTCTAAAGGCTTTTTCATCGGAATTAAACCCTAATTCCCCGTTACCCGATAATGCCA 177635 Query 176 TGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 ||||||||| |||||||||||| |||| ||||| |||||||| Sbjct 177634 TGGTAGGCCCATATCCTACCATCCAAAGCTGATAAGGCAGAAA 177592 >seq53 Length=909755 Score = 150 bits (166), Expect = 5e-34 Identities = 100/111 (90%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 108 TGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 |||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 354934 TGTGGTAGCCGTTTCTGAGGCTCCTTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGT 354993 Query 168 TGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 | || |||| |||| || |||||||||||| |||| |||||||||||||| Sbjct 354994 TAATGCCATAGTAGACCCATATCCTACCATCCAAAGCTGATAGGGCAGAAA 355044 >seq3090 Length=915709 Score = 96.9 bits (106), Expect = 1e-17 Identities = 118/171 (69%), Gaps = 40/171 (23%) Strand=Plus/Minus Query 335 GGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTA 393 |||| |||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||| Sbjct 700555 GGGTATTTATGCATGTATTAGCTTTAGAATTACTACGGTTATCCAAGTAGTAAGGTACTA 700496 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTAT 453 || ||| || |||| |||| Sbjct 700495 TCGAATTCACAATAAAAAATTT-------------------------------------- 700474 Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 700473 -CTTAGACATACATGGCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 700424 Score = 91.5 bits (100), Expect = 4e-16 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 446 TTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTG 500 ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 212586 TTGTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCGTATGACTACTG 212640 >seq3101 Length=2481951 Score = 87.8 bits (96), Expect = 5e-15 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 54 ACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTG 111 |||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| Sbjct 220966 ACTACCTCCCTGTGTCAGGATTAGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTG 220909 >seq468 Length=1367571 Score = 75.2 bits (82), Expect = 3e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA 172 || ||||||||||||||||||| || ||||||||||||||||||||| ||| Sbjct 418483 CTGAGGCTCCCTCTCCGGAATCAAATCCTAATTCCCCGTTACCCGTTAATA 418433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510352241152