Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3042 203 3e-47 seq653 165 6e-36 >seq3042 Length=3267112 Score = 203 bits (224), Expect = 3e-47 Identities = 598/903 (66%), Gaps = 39/903 (4%) Strand=Plus/Plus Query 61044 GAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAA 61103 ||||||| ||| ||||| | || ||||| || | | ||| | |||| |||||||| Sbjct 2153510 GAATCCTAATCGCTTCGTGCTCTTTCCCATTCAGGAACACGATGTGTGGCAGATGTACAA 2153569 Query 61104 AAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT-GTCCAAAGACATGAATG 61162 ||||||||||| || |||||||| | ||||| ||||| | || || ||| | || | Sbjct 2153570 GAAGGCGGAAGCCTCGTTCTGGACAGCTGAGGAACTCGATCTAGTACAC-GACCTTAAGG 2153628 Query 61163 ACTGGG--AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTT 61220 |||||| ||| || | | | || | |||| ||||| |||||| | || || || Sbjct 2153629 ACTGGGCAAGCCTTA--CAAACAACGAGCGCTATTTTATTAAGCATGTGCTTGCTTTTTT 2153686 Query 61221 TGCCGCTTCGGACGGTATCGTCAATGAGAATTTA--TTGGAACGTTTCGCGCAGGAGGTG 61278 || ||| || || || |||||||| ||| | | ||| |||| | || ||| Sbjct 2153687 CGCAGCTAGTGATGGAATTGTCAATGAAAATCTGGCTATGAA--TTTCAGCAATGAAGTG 2153744 Query 61279 CAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCG 61338 || ||| | ||||| || |||||||||||||| || || || || |||||| | |||||| Sbjct 2153745 CAGGTGCCAGAGGCTCGCTGTTTCTACGGCTTTCAAATCGCTATTGAGAATATTCACTCG 2153804 Query 61339 GAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAACGAT 61396 ||| |||| |||| ||||||||||| |||| ||| ||| | ||| | || || Sbjct 2153805 GAGGTGTATTCGCTTCTTATCGATACGTATATCAAGGACGCGATTGAGAA---GGACCAT 2153861 Query 61397 -TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 | || ||| || || || || || || | ||||| ||||||| | || Sbjct 2153862 CTATTGCGTGCAATTGAAACCATCCCTTGCGTCACAAAAAAAGCTCATTGGGCGCTTAAG 2153921 Query 61456 TG----GAT-CACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGG 61510 || ||| ||| |||| || ||| | || | || | || ||||| | | Sbjct 2153922 TGGTGCGATCCACGAGTA-----TCTTCATATCCGGAGAGGCTGTTAGCTTTTGCTGCAG 2153976 Query 61511 TCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGAC 61570 | |||||| | |||||| || || || | ||||||||||| | ||||| ||||| | Sbjct 2153977 TAGAGGGTATTTTTTTCTCAGGCTCATTCTGCTCAATCTTTTGGCTTAAGAAGCGTGGTC 2154036 Query 61571 TTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTG 61630 | ||||| ||||| | ||| |||||| | || || || || || ||||| | Sbjct 2154037 TGATGCCTGGTCTTAGCTTTTCAAATGAGCTCATTAGTCGGGATGAAGGTATGCACACGG 2154096 Query 61631 ATTTTGCT---GTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTG 61687 | |||||| | || || || || |||| || | | || || | |||| Sbjct 2154097 ACTTTGCTTGCCTCATG-TACTCGAA-GCTA----GTCACGAAGCTATCTGAAGGTCGTG 2154150 Query 61688 TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGC 61747 | || ||| | || ||||| || || || | ||||| | ||| | | | Sbjct 2154151 TACACGAAATTATACGGGAGGCCGTGTTGATTGAGCGCGAATTCGTACGCGACTCGCTCC 2154210 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCG 61807 | || | || |||||||||| || || |||| ||||| || |||||||| || | Sbjct 2154211 CAGTTGAGTTGATAGGCATGAATTCAGGGCTCATGTGTCAGTACATAGAATTTGTGGCTG 2154270 Query 61808 ACCGTCTG--TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGA 61865 ||||| || | ||| || | |||| | |||||| ||| || ||||| || || Sbjct 2154271 ACCGTTTGCTCTACTCGCTTGGTGTATCCA--AGATCTACAATGTGAGGAACCCGTTCGA 2154328 Query 61866 TTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGA 61925 || |||||||||||||| || | || |||||||| ||||| || || ||||| ||||| Sbjct 2154329 TTGGATGGACATGATTTCTCTTCAAGGTAAGACGAACTTTTTTGAAAAGCGTGTTGGCGA 2154388 Query 61926 CTA 61928 || Sbjct 2154389 GTA 2154391 >seq653 Length=2021493 Score = 165 bits (182), Expect = 6e-36 Identities = 539/826 (65%), Gaps = 10/826 (1%) Strand=Plus/Plus Query 65992 CACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGT 66051 |||||| || || | ||| | |||||| | ||||| || || | || || |||| || Sbjct 712101 CACAAATTTAGGCAAGGCCACAGATGCCAAATTGCAAACTGCGACTTCATCCGGAGAAGT 712160 Query 66052 ATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATT 66111 ||| || | | |||| ||| | ||| || | || || ||||| | ||| || || || Sbjct 712161 ATATTCCATCACTTCGCAGCATAAATTGCTCGAACGAATTGTGCCAAGATTTTGCTGGTT 712220 Query 66112 ACTCTTGCGATT-GCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 ||| ||||| ||| || || ||||| | ||| || ||| || || |||| || | Sbjct 712221 CGACTTTCGATTCGCA-GCGTCTTTGTAGAGCATATAAGGAACACCAGTTTCAATCTGAG 712279 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGC 66230 || | || || ||| || | || || | ||| | || | || | Sbjct 712280 CGTCCAGAATAGCAAACCATAGCTGCTGAGCATTAATCGTTTTTCGAGCACGTCCATCCT 712339 Query 66231 GTTCGTAATGTTCGTAGAGG-TGT-TCGAAGGATTCACCCCATACTTCGGACAGACATGG 66288 ||||||| | | ||| | || ||||| |||||||| |||| | || | || Sbjct 712340 GTTCGTACT--TAGTATATAATGCATCGAATTCATCACCCCAGCATTCGTAAAGTCCAGG 712397 Query 66289 ACACTT-GTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATA 66347 | ||| || ||||| | || ||| | |||| | ||| || || |||||| | Sbjct 712398 -CGCTTCGTTCGGACAGAAGAGACTCCACTTGCCATTCGCTTCGACGCGCTTCATAAAGA 712456 Query 66348 GATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGAT 66407 |||| |||||||| || || ||||| | ||| || || || || |||| ||||||||| Sbjct 712457 GATCCGGTATCCATAGTGCATAGAACAAATCACGGGCACGATGTAGCTCATTGCCGTGAT 712516 Query 66408 TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGA 66467 | || ||||| || || || ||||| | ||||||||||| ||||| | ||||| || | Sbjct 712517 TCTTTCGCAAATCCAGAAATTCAAAAACATCGGCATGCCACGGTTCTAAATAGATAGCAA 712576 Query 66468 ACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACAC 66527 |||| || | || || || |||||||| || || || ||||| || || || || | Sbjct 712577 ACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCGAGCAGTATCATTAAAAACGC 712636 Query 66528 GCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT- 66586 ||||||| || | || || || ||| ||| |||||||| ||| | | | || Sbjct 712637 GCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCC-CCGAATGTAACTGTTTGTC 712695 Query 66587 GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA 66646 || || || | ||| | | | | ||||| ||||| ||| ||||| || ||||| Sbjct 712696 GCACGGATGTTGTGCATACTAACTCCAATCCCACCAGCCCATTTCGAAATACACGCACAT 712755 Query 66647 TCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCAT 66706 | | ||| |||| || || || || ||| ||| || | || || ||||| Sbjct 712756 TGTTTAAGTGTATCATATATACCTTCTATTGAATCATCCTGCATTGCCAAAAGAAAGCAT 712815 Query 66707 GAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAG 66766 || | ||| || ||||| | || |||||| || ||||| ||||| ||||| Sbjct 712816 GACGATAATTGTGGACGCGGTGTACCTGCATTGAAGAGTGTTGGTGTCGCGTGGGTAAAA 712875 Query 66767 TAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGT 66812 | | | |||||| | | ||| ||||||| |||| | ||||| Sbjct 712876 AACTTTTGTGACATGAACTCGTATGTCTCGAGTGCAGCTTTAATGT 712921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397552678971680