Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq494 304 3e-79 seq2293 80.6 6e-12 >seq494 Length=1635 Score = 304 bits (336), Expect = 3e-79 Identities = 737/1099 (67%), Gaps = 23/1099 (2%) Strand=Plus/Plus Query 866 CACTATGGACCGTCAGTGGGACGCACGCTTCAATGTACCTACCGATGAAGATCTCGAGGC 925 ||| ||||||||||| |||||||| |||||||| || || || ||||||||| | | | Sbjct 7 CACCATGGACCGTCAATGGGACGCTCGCTTCAACGTTCCAACGGATGAAGATTTAGGTAC 66 Query 926 TCTCCTTCTCAATGTCAAGA-GCGAAGTTGACCAAGGAAAGTTCCAATACTGCCTCGTCG 984 || | ||| |||||| || | | || ||| |||||||||||| || || | Sbjct 67 ACTTTTGGCCAACGTCAAGGTGCTTAAT-GATCAACACAAGTTCCAATACGTACTTGTTG 125 Query 985 GTGGAGTAGAGATCGGTGATCGTCCTTACCAAACGGACTACCTCATCAAGCACGTGCAC- 1043 |||| || || || || |||| |||| || | ||||| | || ||||||||| Sbjct 126 GTGGCGTGGAAATTGGAGATCAACCTTTCCGTAATGACTATTTAATTCGTCACGTGCACT 185 Query 1044 GTAGCTCTGGTGTACAATAACCGCGTCTCGAAGAACTCCGTGCT--GAAGAATCTTCAAA 1101 || | |||||| ||| |||| | || | | | | | | ||| | ||| | ||| | Sbjct 186 GTTG-TCTGGTATACCCTAACAGGGT-TAGTAAATC-CAGTGTTTTGAAACAACTTGGTA 242 Query 1102 TCAAGCAAGGCAATGGCTATTACCTTGTTCCACGTAACCGTGATCTGCCTATCCAAGGCT 1161 | || || |||| || || | |||||||||| | ||| ||| | ||||| | Sbjct 243 TTAAAGTGGGTCATGGATACTATTTGGTTCCACGTACAAGAACTCTACCTGTGCAAGGAT 302 Query 1162 GGATCGATCATCACACCAAGTCAAAAACGAAAATCAACGAGGACTTCAAGCTGTATGA-- 1219 |||| || ||||||| ||| || || ||||| ||| || ||| | | ||| Sbjct 303 GGATTGACCATCACAAGAAGGAGAAGACTAAAATTAACAAGTGTTTCGTATTATTTGAAA 362 Query 1220 GTACGGCACTCTACCTGCTGACAAACCCAATATCTCTGCT---CAAGTGACCAAGAGATC 1276 || | || || || | || | | | | || | ||| | ||| || | Sbjct 363 GTGGAGTAC-CT-CCAACGGATACTGCTGGTGTTGTTGGTTTTCAAAAAAG-AAGTGAAC 419 Query 1277 GCCAGAGGAAAAGAAGAGAAAACTTGACGATGTCATCAAGGAGATGCGAGGC-ATGATCG 1335 | || |||||||| || | || || | |||| || ||| || | ||||| | Sbjct 420 -----ATGAGAAGAAGAGGAAGTTGGATGAAATTATCATTGAAATGA-AGACTATGATAG 473 Query 1336 AAGAAGGACGCGAAGAGGAAGCCTTCACCAAGTTTCCTCGAAACTACTTGACCTATGGAG 1395 ||||||| | || ||||||| || ||||||||||| | |||| | || ||||||| Sbjct 474 AAGAAGGCCATGAGAAGGAAGCGTTTGCCAAGTTTCCTAGGAACTTTCTTACGTATGGAG 533 Query 1396 AAAAGCTGAAAGCTATGATCTCACAGCGTCGTGACTTTTTCAAGAGCAACGGTGACCCTC 1455 | || || ||||| |||||| || | || || ||||| | ||| |||| | Sbjct 534 AGAAACTAAAAGCAATGATCAATCAAAAGAGAGATTTCTTCAAATCTAGCGGACACCCAC 593 Query 1456 ACATCTGGCTTACTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCATCTATC 1515 | || ||| |||| ||| | ||||| ||||||||| || ||||| || || ||||||| Sbjct 594 ATATTTGGATTACCGGTCCACCTGGCAGTGGCAAGTCAGCAATCTTACAAGTTATCTATC 653 Query 1516 CTGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTACCAGCCAAAAGTGC 1575 | |||||||||||||| |||| |||| || |||||||| | ||| |||| | | | Sbjct 654 CGACGTATTACAACAAGGATCTTAACAATCGGTTCTTCGATCTCTACTCGCCAGAGTTTC 713 Query 1576 ACACGCACATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGGAGTCCAGT 1635 | || || | || | || ||| | |||||| ||| |||||||| | || || || | Sbjct 714 ATACCCATGTTCTCTTACAGGATCTGGATCACCAGACCATTGAAAAGCTCGGTGTTCAAT 773 Query 1636 TCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGC 1695 || | || ||| | ||||||||||| || ||||| |||| || |||||||| ||||| | Sbjct 774 TCATCAAAACCTTGTGTGACGAAGCGGGATTCCCTATTGATCAGAAGTACAAAACGCCTC 833 Query 1696 AACTGGCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCATCAACGATGTGATTCCGG 1755 |||| | || || || | | ||||| || || ||| || | || || | || | Sbjct 834 AACTTACACGAACAACGGCACTTGTCTCGTCTAATTTCGGAATACAAGACGTTCTACCCG 893 Query 1756 AAGACATGCCAGGACGCAATGAAAATCTAACGGCTCTGCGTCGTCGCTTCTATGAAGTGA 1815 |||||||||| || || ||||||||||| | || | ||||| || |||| || || | Sbjct 894 AAGACATGCCTGGTCGAAATGAAAATCTTGCTGCGTTACGTCGACGGTTCTTCGAGGTTA 953 Query 1816 ACGTTCGTGTTCTTTTGCAGATACTCGGACTGAAGCTTCTGTCGAAGTACGAACTGAACG 1875 | ||| ||| || ||| | |||||||| ||||| || |||||||||||| | | | Sbjct 954 ATGTTAGTGACTTTCTGCGACTGCTCGGACTCAAGCTGCTCTCGAAGTACGAAATTACGG 1013 Query 1876 GCTTGAAACGCGTGGGAAATCAAGATCCAACCAAACTCTTCATGTCGTGGGATTACACTC 1935 | | || | || || | |||||| ||| || ||||| ||||| ||| | Sbjct 1014 GACTAAAGCTTAAAGGTAACCTGGATCCACGCAAGCTATTCATACATTGGGACTACTTGC 1073 Query 1936 GTGACATTCCCACTGGAGA 1954 | |||| || ||||| || Sbjct 1074 GCAACATACCAACTGGTGA 1092 >seq2293 Length=1161 Score = 80.6 bits (88), Expect = 6e-12 Identities = 120/169 (71%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 3483 AACTTTTGGGATCAAGTGAGTCAACATGGATGGGAACAGATGCTTCTAAATGCGAGACGT 3542 ||||||||| ||||| | || ||||||||||||| ||||| | |||||||||||| Sbjct 262 AACTTTTGGAATCAAATTGACGAAAATGGATGGGAACAAATGCTACAGAATGCGAGACGT 203 Query 3543 CAAGTGTTTCCTAAGAGATATAAACCAGAGGATACTGCGCATCGTCACCGTCTAGAAGGT 3602 | || ||||||| ||| || | || ||| |||||||| || | || | Sbjct 202 GGACAATTCCCTAAGAAGTATTGGCCTAATGACTATGCTCATCGTCA---TCGAAAACAT 146 Query 3603 GA---GCAAGATAAGGATGTGTCTGTGCGTAGTTATACCAGACGTAGTT 3648 || |||||||||||||| ||| |||||| | ||| | ||||||| Sbjct 145 GACCGTCAAGATAAGGATGTAGTTGTCCGTAGTCACACCCGTCGTAGTT 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11897188528940