Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq559 268 1e-69 seq51 268 1e-69 seq284 178 2e-42 seq293 152 8e-35 seq558 138 2e-30 seq22 132 7e-29 seq212 120 5e-25 seq24 86.0 9e-15 >seq559 Length=16282 Score = 268 bits (296), Expect = 1e-69 Identities = 199/229 (87%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| || |||||||||||| | Sbjct 9572 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCATTTACTAGGAATT-C 9515 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| |||||||| | ||||||| |||| |||||| Sbjct 9514 CTCGTTCAAGACTGAAAATTGCAACAGTCTATCCCTAGCACGATGCGCATTCACAAGATT 9455 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||| |||||| ||| |||||||||| ||||||||||||||||||||| Sbjct 9454 ACCCAGACCTATCGATCAAGGTTATATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCG 9395 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 9394 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 9346 >seq51 Length=275480 Score = 268 bits (296), Expect = 1e-69 Identities = 199/229 (87%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| || |||||||||||| | Sbjct 24873 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCATTTACTAGGAATT-C 24930 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| |||||||| | ||||||| |||| |||||| Sbjct 24931 CTCGTTCAAGACTGAAAATTGCAACAGTCTATCCCTAGCACGATGCGCATTCACAAGATT 24990 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||| |||||| ||| |||||||||| ||||||||||||||||||||| Sbjct 24991 ACCCAGACCTATCGATCAAGGTTATATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCG 25050 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 25051 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 25099 Score = 268 bits (296), Expect = 1e-69 Identities = 199/229 (87%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| || |||||||||||| | Sbjct 38262 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCATTTACTAGGAATT-C 38319 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| |||||||| | ||||||| |||| |||||| Sbjct 38320 CTCGTTCAAGACTGAAAATTGCAACAGTCTATCCCTAGCACGATGCGCATTCACAAGATT 38379 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||| |||||| ||| |||||||||| ||||||||||||||||||||| Sbjct 38380 ACCCAGACCTATCGATCAAGGTTATATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCG 38439 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 38440 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 38488 Score = 268 bits (296), Expect = 1e-69 Identities = 199/229 (87%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| || |||||||||||| | Sbjct 57168 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCATTTACTAGGAATT-C 57225 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| |||||||| | ||||||| |||| |||||| Sbjct 57226 CTCGTTCAAGACTGAAAATTGCAACAGTCTATCCCTAGCACGATGCGCATTCACAAGATT 57285 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||| |||||| ||| |||||||||| ||||||||||||||||||||| Sbjct 57286 ACCCAGACCTATCGATCAAGGTTATATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCG 57345 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 57346 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 57394 >seq284 Length=90265 Score = 178 bits (196), Expect = 2e-42 Identities = 150/179 (84%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 22 TCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCA-ACAATT 80 ||||||| |||| ||||||| || |||||||||||| ||||||| ||||| | |||| Sbjct 63911 TCAACGCAAGCT-GATGACTTGCATTTACTAGGAATT-CCTCGTTCAAGACTTGAAAATT 63968 Query 81 GCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAG 139 |||| |||||||| | ||||||| |||| |||||||||| ||||| ||| |||| Sbjct 63969 GCAACAGTCTATCCCTAGCACGATGCGCATTCACAAGATTACCCAGACCTATCGATCAAG 64028 Query 140 GTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGC 198 || ||| |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 64029 GTTATATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGC 64087 >seq293 Length=87265 Score = 152 bits (168), Expect = 8e-35 Identities = 175/230 (76%), Gaps = 9/230 (4%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 ||||||||| || |||||| |||| | |||| ||||||| || |||||| | ||||| Sbjct 50051 TACAAAGGGTAGAGACGTAATCAAAACAAGCT-GATGACTTGCATTTACTAAAACTTTCC 50109 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA---T 118 | || ||||| || |||||||| |||||||| | | ||||| | | || | | | Sbjct 50110 T--TTCAAGACTAAAAATTGCAACAGTCTATCCCTAGCGCGATGCACATCCACACAAATT 50167 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||||| ||||| ||| ||||| ||| || ||||||| |||||||||||||||||||| Sbjct 50168 TACCCAGACCTATCGATCAAGGCTATATACACGTTGAACGCATCAGTGTAGCGCGCGTGC 50227 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 || |||| |||||||| | ||||| | |||||||| || ||||||| Sbjct 50228 GGTCCAGGACATCTAA--ACGTCACAAATTTGTTATTGTTTC-AACTTCC 50274 >seq558 Length=16345 Score = 138 bits (152), Expect = 2e-30 Identities = 105/123 (85%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 77 AATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGC 135 |||||||| |||||||| | ||||||| |||| |||||||||| ||||| ||| Sbjct 13643 AATTGCAACAGTCTATCCCTAGCACGATGCGCATTCACAAGATTACCCAGACCTATCGAT 13584 Query 136 CAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 195 |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 13583 CAAGGTTATATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 13524 Query 196 GGC 198 ||| Sbjct 13523 GGC 13521 >seq22 Length=393590 Score = 132 bits (146), Expect = 7e-29 Identities = 170/230 (74%), Gaps = 11/230 (5%) Strand=Plus/Minus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 ||||||||| || |||||| | || | || |||||| || ||||||| | |||| Sbjct 383941 TACAAAGGGTAGAGACGTAATTAAAACAAG----ATGACTTGCATTTACTAGAACTTTC- 383887 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA---AAGAT 118 || || ||||| || | ||||| |||||||| | ||||||| | || || | Sbjct 383886 TCTTTTAAGACTAAAATCTGCAACAGTCTATCCCTAGCACGATGCACAGCCACACAAAAG 383827 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||||| ||||| ||| ||||| ||| |||| ||||| ||||||||||||| |||||| Sbjct 383826 TACCCAGACCTATCGATCAAGGCTATATACTCATTGAACGCATCAGTGTAGCGTGCGTGC 383767 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 || |||| |||||||| | ||||| || |||||||| || ||||||| Sbjct 383766 GGTCCAGGACATCTAA--ACGTCACAAACTTGTTATTGTTTC-AACTTCC 383720 >seq212 Length=129902 Score = 120 bits (132), Expect = 5e-25 Identities = 168/231 (73%), Gaps = 11/231 (5%) Strand=Plus/Plus Query 5 AAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT-- 62 ||| ||||||||||| | |||| | |||| ||||||| || || |||| |||||| | Sbjct 98838 AAATGGCAGGGACGTTGACAACACAAGCT-GATGACTTGCATTTTCTAGAAATTTCTTTA 98896 Query 63 ---CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA---AAG 116 | || || | | |||||||| ||| |||| | | |||| | | | ||| Sbjct 98897 GGGCTTTCTAGTCTAGAAATTGCAACAGTCTTTCCCTAACGCGATACACATCTACGCAAG 98956 Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 || |||| ||||| | | ||| | ||| |||||||||| ||||||||||| |||||| Sbjct 98957 ATAACCCAGACCTATTGATGAAGCT-ATATACTCGTTGAACGCATCAGTGTAGTGCGCGT 99015 Query 177 GCGGCCCAGAACATCTA-AGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 | ||||||| | ||||| ||| | |||||||| |||||||||| | || || Sbjct 99016 GTGGCCCAGGATATCTATAGGACGTCACAGACTTGTTATTGCCCCCAAATT 99066 >seq24 Length=392057 Score = 86.0 bits (94), Expect = 9e-15 Identities = 156/225 (69%), Gaps = 20/225 (9%) Strand=Plus/Minus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 ||||||||| || ||| | ||||||| |||| ||||||| | ||| ||||| Sbjct 316158 TACAAAGGGTAGCCACGAAATCAACGCAAGCT-GATGACTTG--------AGGGATTTC- 316109 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTAC 121 ||| | |||| || ||||||| |||| || | ||||||| |||| | | || Sbjct 316108 TCGATTCAGACTAAGGATTGCAACAGTCTAATCCTAGCACGATGCGCATTCACAAAATAA 316049 Query 122 CCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181 |||| || || ||| | | |||| ||| | || |||| |||| |||| | Sbjct 316048 ----ACCTACCGATCATGGTTACATACTCATTGCA-ACGTCAG-----CGCGAGTGCCGT 315999 Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 ||||||||| ||||||||||| ||| |||||||||||| || || Sbjct 315998 CCAGAACATTTAAGGGCATCATAGATTTGTTATTGCCTCCAAGTT 315954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751986282345