Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq559 104 1e-20 seq51 91.5 8e-17 >seq559 Length=16282 Score = 104 bits (114), Expect = 1e-20 Identities = 95/119 (80%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGAT--AACATCGC 58 ||||||||||||||||||||||| || ||||| || |||| | | ||| | Sbjct 9036 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTTAAGTAAACGACTG 8977 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 8976 CCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 8918 >seq51 Length=275480 Score = 91.5 bits (100), Expect = 8e-17 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGAT--AACATCGC 58 |||||||||||||| |||||||| || ||||| || ||||| | | ||| | Sbjct 25409 GAACCCAAAGACTTCGATTTCTCATACGGTGCTGACAAGGTCAATTTAAGTGAACGACTG 25468 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||| | ||||||||||||||| |||||||||||||| |||||| ||| |||||| Sbjct 25469 CCAATCTCGAGTCGGCATAGTTTATGGTTAAGACTACGATAGTATCTAATCAGCTTCGA 25527 Score = 91.5 bits (100), Expect = 8e-17 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGAT--AACATCGC 58 |||||||||||||| |||||||| || ||||| || ||||| | | ||| | Sbjct 38798 GAACCCAAAGACTTCGATTTCTCATACGGTGCTGACAAGGTCAATTTAAGTGAACGACTG 38857 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||| | ||||||||||||||| |||||||||||||| |||||| ||| |||||| Sbjct 38858 CCAATCTCGAGTCGGCATAGTTTATGGTTAAGACTACGATAGTATCTAATCAGCTTCGA 38916 Score = 91.5 bits (100), Expect = 8e-17 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGAT--AACATCGC 58 |||||||||||||| |||||||| || ||||| || ||||| | | ||| | Sbjct 57704 GAACCCAAAGACTTCGATTTCTCATACGGTGCTGACAAGGTCAATTTAAGTGAACGACTG 57763 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||| | ||||||||||||||| |||||||||||||| |||||| ||| |||||| Sbjct 57764 CCAATCTCGAGTCGGCATAGTTTATGGTTAAGACTACGATAGTATCTAATCAGCTTCGA 57822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278395085370