Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq559 223 6e-56 seq461 75.2 2e-11 >seq559 Length=16282 Score = 223 bits (246), Expect = 6e-56 Identities = 202/250 (81%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| || |||| ||||||||||||| Sbjct 8669 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTAGCTCATTTGAATACATTAGCA 8728 Query 130 TGGAATAATAGAATAGGACGTGCG-GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||||| ||| ||| | | | |||||||||||||||| | ||| |||||| Sbjct 8729 TGGAATAATAAGATATGACTTTGGTGGTCTATTTTGTTGGTTTGCAC-ACCAGAGTAATG 8787 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| |||||| | |||| | |||||||||||||||||||||| Sbjct 8788 ATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGATCG 8847 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 | |||| | || |||||||| || ||||||||||||||||||||||| |||||| Sbjct 8848 CTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGA 8906 Query 309 AAGTTAGGGG 318 |||||||||| Sbjct 8907 AAGTTAGGGG 8916 >seq461 Length=30683 Score = 75.2 bits (82), Expect = 2e-11 Identities = 60/72 (83%), Gaps = 4/72 (6%) Strand=Plus/Minus Query 81 TGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCATGGAATA 136 || ||||||||||||||| |||||||| || |||| |||||||||||||||||||| Sbjct 5016 TGTAAAAATTAGAGTGTTTGAAGCAGGCGTTAGCTCATTTGAATACATTAGCATGGAATA 4957 Query 137 ATAGAATAGGAC 148 ||| ||| ||| Sbjct 4956 ATAAGATATGAC 4945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915182766784