Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq67 165 3e-38 seq51 165 3e-38 seq197 84.2 9e-14 >seq67 Length=242904 Score = 165 bits (182), Expect = 3e-38 Identities = 143/176 (81%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 512 GCACCATCGACCGATCCTGATGTCTTCG----GATGGATTTGAGTAAGAGCATAGCTGTT 567 |||| ||| ||||||| ||| || ||| || ||||||||| |||| |||| Sbjct 220610 GCACTATCAACCGATCTTGAA-TCCTCGTGGTGAAAGATTTGAGTTCAAGCACGTATGTT 220668 Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 || |||| |||||||||||||||||||||| |||||||||||||| | ||||| |||||| Sbjct 220669 GGTACCCAAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGAAAACTTTGGTGG 220728 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||| |||| ||||| ||||||||||| |||| || |||||||||||||||| Sbjct 220729 AAGCTCGTAGCGATTCTGACGTGCAAATCGCTCGTTGAACTTGGGTATAGGGGCGA 220784 Score = 131 bits (144), Expect = 7e-28 Identities = 123/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || | || ||| |||| | || |||||||||| Sbjct 219925 GAGTCGCGTTGTTTGAGAATGCAGCGCAAAGTAGGTGGTGAATTCCATCAAAAGCTAAAT 219984 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| |||||||||||| ||||||| ||| ||| ||||||||| ||||| || Sbjct 219985 ATTGGTGCGAGACCGATAGCATACAAGTACCATGAGGGAAGGATGAAAAGGACTTTAAAA 220044 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 | |||||||| || || ||||| | ||||||| || Sbjct 220045 ATAGAGTTAAGGAGTACCTGAAACTACTGAAAGGTAA 220081 >seq51 Length=275480 Score = 165 bits (182), Expect = 3e-38 Identities = 143/176 (81%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 512 GCACCATCGACCGATCCTGATGTCTTCG----GATGGATTTGAGTAAGAGCATAGCTGTT 567 |||| ||| ||||||| ||| || ||| || ||||||||| |||| |||| Sbjct 35125 GCACTATCAACCGATCTTGAA-TCCTCGTGGTGAAAGATTTGAGTTCAAGCACGTATGTT 35067 Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 || |||| |||||||||||||||||||||| |||||||||||||| | ||||| |||||| Sbjct 35066 GGTACCCAAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGAAAACTTTGGTGG 35007 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||| |||| ||||| ||||||||||| |||| || |||||||||||||||| Sbjct 35006 AAGCTCGTAGCGATTCTGACGTGCAAATCGCTCGTTGAACTTGGGTATAGGGGCGA 34951 Score = 165 bits (182), Expect = 3e-38 Identities = 143/176 (81%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 512 GCACCATCGACCGATCCTGATGTCTTCG----GATGGATTTGAGTAAGAGCATAGCTGTT 567 |||| ||| ||||||| ||| || ||| || ||||||||| |||| |||| Sbjct 54031 GCACTATCAACCGATCTTGAA-TCCTCGTGGTGAAAGATTTGAGTTCAAGCACGTATGTT 53973 Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 || |||| |||||||||||||||||||||| |||||||||||||| | ||||| |||||| Sbjct 53972 GGTACCCAAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGAAAACTTTGGTGG 53913 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||| |||| ||||| ||||||||||| |||| || |||||||||||||||| Sbjct 53912 AAGCTCGTAGCGATTCTGACGTGCAAATCGCTCGTTGAACTTGGGTATAGGGGCGA 53857 Score = 131 bits (144), Expect = 7e-28 Identities = 123/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || | || ||| |||| | || |||||||||| Sbjct 35810 GAGTCGCGTTGTTTGAGAATGCAGCGCAAAGTAGGTGGTGAATTCCATCAAAAGCTAAAT 35751 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| |||||||||||| ||||||| ||| ||| ||||||||| ||||| || Sbjct 35750 ATTGGTGCGAGACCGATAGCATACAAGTACCATGAGGGAAGGATGAAAAGGACTTTAAAA 35691 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 | |||||||| || || ||||| | ||||||| || Sbjct 35690 ATAGAGTTAAGGAGTACCTGAAACTACTGAAAGGTAA 35654 Score = 131 bits (144), Expect = 7e-28 Identities = 123/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || | || ||| |||| | || |||||||||| Sbjct 54716 GAGTCGCGTTGTTTGAGAATGCAGCGCAAAGTAGGTGGTGAATTCCATCAAAAGCTAAAT 54657 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| |||||||||||| ||||||| ||| ||| ||||||||| ||||| || Sbjct 54656 ATTGGTGCGAGACCGATAGCATACAAGTACCATGAGGGAAGGATGAAAAGGACTTTAAAA 54597 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 | |||||||| || || ||||| | ||||||| || Sbjct 54596 ATAGAGTTAAGGAGTACCTGAAACTACTGAAAGGTAA 54560 >seq197 Length=136000 Score = 84.2 bits (92), Expect = 9e-14 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 574 CGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTC 633 |||||||||||||||||||||||| |||| |||| | || | || ||||||| | |||| Sbjct 21349 CGAAAGATGGTGAACTATGCCTGAGTAGGCTGAAACTAG-GTGAATTCTGGTGAAAGCTC 21291 Query 634 GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 | | | | | || |||||||||||||||| | |||| | | ||||| Sbjct 21290 GTATC-GATATGACGTGCAAATCGATCGTTGACTTTGTATTTGGGGGC 21244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079959609650