Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq47 322 1e-85 seq427 113 1e-22 >seq47 Length=279382 Score = 322 bits (356), Expect = 1e-85 Identities = 320/410 (78%), Gaps = 6/410 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | |||| |||| |||||||||| |||||||||||||||||||||||| |||| || Sbjct 78549 TACCCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGC 78608 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAGACAGGTG 121 |||||| ||||||||||||||||||||| | ||| |||||| ||| | || ||| | Sbjct 78609 TAGCGTTGCTCGGAATTACTGGGCGTAAAGGGAGCGTAGGCGGACTGT-TTAGTCAGAGG 78667 Query 122 TGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAG 181 ||||| ||| ||||| ||||| |||||||| |||| |||| | || |||| | || Sbjct 78668 TGAAAGCCCAGGGCTCAACCTTGGAATTGCCTTTGATACTGGCAGTCTTGAGTACGGAAG 78727 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 ||| |||||| ||| |||||| ||||||| ||||||||| ||| |||||||| || Sbjct 78728 AGGTATGTGGAACTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAGTG 78787 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 |||||||| | |||| ||||||||| | || ||||||||||||||||||||| Sbjct 78788 GCGAAGGCGACATACTGGTCCGTTACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA 78847 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGG--GGATTT 359 |||||||||||||||||||||||||| |||||||| |||||||| || || | Sbjct 78848 GGATTAGATACCCTGGTAGTCCACGCTGTAAACGATGAGTGCTAGTTGTCGGCAGGCATG 78907 Query 360 ACTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || | ||| ||| ||||||||| | ||| ||||||||||| ||| Sbjct 78908 CCT--GTCGGTGACGCAGCTAACGCATTAAGCACTCCGCCTGGGGAGTAC 78955 >seq427 Length=39484 Score = 113 bits (124), Expect = 1e-22 Identities = 235/344 (68%), Gaps = 16/344 (5%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGT 60 ||| | || || ||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 9898 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 9840 Query 61 GCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGAC--AG 118 || ||| ||| ||||||| | | ||||||||| || | ||| |||| | |||| | Sbjct 9839 GCGAGCATTATTCGGAATGATTAGGCGTAAAGAGTTTGTAGGTGGTTTTTTAAGTTGAAA 9780 Query 119 GTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTG----ACTGCACGACTAGAGT 174 | |||| | || ||| | | ||||| | |||| ||| |||| Sbjct 9779 GAAACAAATTAAAG--CTCAACTTTATA----CATTTTTTCAAAACTGATAAACTCGAGT 9726 Query 175 GTGTC-AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAA 233 | |||||| ||||||| | || || | |||| ||| |||| | ||||| Sbjct 9725 ATAAATAGAGGGTAATGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAA 9666 Query 234 CACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGG 293 | | | |||||||||| |||||| | |||||| || | |||||||| |||| Sbjct 9665 GATCGACGGCGAAGGCAATTACCTGGGTATATACTGACACTGAGAAACGAAAGCTTGGGT 9606 Query 294 AGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||| ||| ||||||||||||| ||||||||| || |||||||| Sbjct 9605 AGCGAACGGGATTAGATACCCCGGTAGTCCATGCTGTAAACGAT 9562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289575716832