Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq47 145 1e-32 seq427 111 2e-22 seq1663 86.0 9e-15 >seq47 Length=279382 Score = 145 bits (160), Expect = 1e-32 Identities = 182/247 (74%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 82002 TTAACCTTCAGGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTGCGG-CTTCGCAGA 81944 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| |||||||||||| ||| || | ||| || || Sbjct 81943 GCCCTGTGTTTTTGATAAACAGTCGCTACCCCCTGGCTTGTGCCACT--------CTTTT 81892 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | || | || || || | ||| | || ||||||||||||| | || |||||||| | Sbjct 81891 CTGGTTGCCCAA-AGAAGAGTCACGC-TTATCCCGAAGTTACGCGTGCAATTTGCCGAGT 81834 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| | |||||||| | | | |||||| |||| ||||||||| ||||||||||||||| Sbjct 81833 TCCTTCAGCACAGTTCTCTCAAGCGCCTTGGTATACTCTACCTGCCCACCTGTGTCGGTT 81774 Query 242 TACGGTA 248 | |||| Sbjct 81773 TCGGGTA 81767 >seq427 Length=39484 Score = 111 bits (122), Expect = 2e-22 Identities = 169/242 (70%), Gaps = 19/242 (8%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 5002 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 4944 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | || ||| | | | | Sbjct 4943 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTC----------ATATTT 4894 Query 127 CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 || | || || || |||||||||||| | ||||||||||| |||||| Sbjct 4893 TTTTAA--------GGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTT 4842 Query 187 AACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGG 246 | ||||||||| | | |||| || ||||| |||| |||||||||||||||| || Sbjct 4841 CAATACAGTTCACTCATTCACCTTGGTCTTCTCGACCTATTCACCTGTGTCGGTTTAGGG 4782 Query 247 TA 248 || Sbjct 4781 TA 4780 >seq1663 Length=1314 Score = 86.0 bits (94), Expect = 9e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 149 TTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCC 208 || |||||||||||| | ||||||||||| |||||| | |||||| || | || || Sbjct 12 TTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAATACAGTTTACTCATACACC 71 Query 209 TTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||||| | ||| |||| |||||||||||||||| |||| Sbjct 72 TTAGTTTACTCAACCTATTCACCTGTGTCGGTTTAGGGTA 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694387333059