Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq47 307 3e-81 seq427 176 1e-41 seq454 82.4 2e-13 seq31 82.4 2e-13 >seq47 Length=279382 Score = 307 bits (340), Expect = 3e-81 Identities = 322/420 (77%), Gaps = 25/420 (6%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || | |||||||||| | || ||||||||| ||||| || | ||||||||| Sbjct 82187 CGCGGGAACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCCTGTGCTGGAGACAGT 82128 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 82127 GGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 82068 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| ||||||||||||||||||| ||||||| || |||||| || Sbjct 82067 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCTGGGCTTCAATTCGGAGCTT-GC---- 82013 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||| | ||||||||| |||||||||||||||||| |||||||||||| ||| Sbjct 82012 ----ACCCCTCCTTTTAACCTTCAGGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTT 81957 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 || || |||||| |||||||||| |||||||||||| | ||||| | | | || Sbjct 81956 GCGGCTTCGCAGAGCCCTGTGTTTTTGATAAACAGTCGCTACCCCCTGGCTTGTGCCACT 81897 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 360 | | || | | ||| | |||| ||| ||||||||||||| Sbjct 81896 CTTTTCTGGTTGCCCA--AAG-----AAGAGTCAC-------GCTTATCCCGAAGTTACG 81851 Query 361 -GTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||| | |||||| ||||||||| | ||||||||||||||||||||||| ||||||| Sbjct 81850 CGTG-CAATTTGCCGAGTTCCTTCAGCACAGTTCTCTCAAGCGCCTTGGTATACTCTACC 81792 >seq427 Length=39484 Score = 176 bits (194), Expect = 1e-41 Identities = 130/152 (86%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | ||||| |||||||||||| ||||||||||| | ||||| Sbjct 5866 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 5807 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 5806 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 5747 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 164 |||||||||||||||||| ||| |||| || Sbjct 5746 GAGTTACGGCCGCCGTTTACTGGGACTTCAAT 5715 Score = 77.0 bits (84), Expect = 8e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 196 TAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGT 255 ||| ||||| |||||||||||| |||| ||||||||| || || | || ||||||| Sbjct 5006 TAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAGAGT 4947 Query 256 GCTGTGTTTTTAATAAACAGTCGCA 280 || ||||||| |||||||||||| Sbjct 4946 CCTAAGTTTTTATTAAACAGTCGCA 4922 >seq454 Length=32781 Score = 82.4 bits (90), Expect = 2e-13 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 |||||||||| | | ||| | ||| |||||||| ||||| ||||| | ||||| Sbjct 3555 TGCATCTTCATGGATAATTCGAATTCCCTGAGTCTATATTGGAGGCAGCGGAGATATCGT 3614 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 106 | | |||||| |||||||||||||||||||||||| Sbjct 3615 TGCACCATTCATGCAGGTCGGAACTTACCCGACAA 3649 Score = 75.2 bits (82), Expect = 3e-11 Identities = 73/94 (78%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||||| | | ||| | ||| |||||||| ||||| ||||| | |||||| Sbjct 626 GCATCTTCATGGATAATTCGAATTCCCTGAGTCTATATTGGAGGCAGCGGAGATATCGTT 685 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 106 | |||||| ||||||||||| |||||||||||| Sbjct 686 GCACCATTCATGCAGGTCGGATCTTACCCGACAA 719 >seq31 Length=341540 Score = 82.4 bits (90), Expect = 2e-13 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 |||||||||| | | ||| | ||| |||||||| ||||| ||||| | ||||| Sbjct 57432 TGCATCTTCATGGATAATTCGAATTCCCTGAGTCTATATTGGAGGCAGCGGAGATATCGT 57373 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 106 | | |||||| |||||||||||||||||||||||| Sbjct 57372 TGCACCATTCATGCAGGTCGGAACTTACCCGACAA 57338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260776259136