Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq47 280 3e-73 seq427 163 6e-38 >seq47 Length=279382 Score = 280 bits (310), Expect = 3e-73 Identities = 290/376 (77%), Gaps = 24/376 (6%) Strand=Plus/Minus Query 2 ACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAA 61 |||| |||||||||| |||| | ||||||| | ||| || | | ||||||||| || Sbjct 82180 ACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCCTGTGCTGGAGACAGTGGGGAAG 82121 Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 82120 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 82061 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181 ||||||||||||||||||||||||| |||||| | ||| || |||| || Sbjct 82060 CGTTATAGTTACGGCCGCCGTTTACCTGGGCTTCAATTCGGAGC-----TTGC----ACC 82010 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 ||| ||||||||| |||||||||||||||||| ||||||| ||| |||||| ||| Sbjct 82009 CCTCCTTTTAACCTTCAGGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTGCGGCTT 81950 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTC-----------GCTTGGGCCTATTCTCTGC 290 ||||| |||||||||||| ||||||||| ||||| ||| | ||| | | Sbjct 81949 CGCAGAGCCCTGTGTTTTTGATAAACAGTCGCTACCCCCTGGCTTGTGCC-ACTCTTTTC 81891 Query 291 GGCCTG-TCATAG-ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | || || || | || || | ||| |||| |||||||| | || |||||||||||| Sbjct 81890 TGGTTGCCCAAAGAAGAGTCA-CGCTTATCCCGAAGTTACGCGTGCAATTTGCCGAGTTC 81832 Query 349 CTTAACAATAGTTCTC 364 ||| | | ||||||| Sbjct 81831 CTTCAGCACAGTTCTC 81816 >seq427 Length=39484 Score = 163 bits (180), Expect = 6e-38 Identities = 125/148 (84%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||| ||||| |||||||| | ||||||| | | ||||| Sbjct 5866 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 5807 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 5806 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 5747 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTT 154 ||||||||||||||||||||||| ||| Sbjct 5746 GAGTTACGGCCGCCGTTTACTGGGACTT 5719 Score = 102 bits (112), Expect = 2e-19 Identities = 130/178 (73%), Gaps = 7/178 (4%) Strand=Plus/Minus Query 190 TAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAA 249 ||| |||||||||||||||||| ||||| |||||||||| | || | | |||||||| Sbjct 5006 TAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAGAGT 4947 Query 250 CCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATA-----GAC 304 ||| |||||| ||||||||||| |||||| | || || ||||| Sbjct 4946 CCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACC--TCATATTTTTTTA 4889 Query 305 AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTC 362 ||| || || |||| ||||||| |||||||||||||||||||| | | ||||| Sbjct 4888 AGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAATACAGTTC 4831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062379995008