Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq47 527 2e-147 seq427 250 7e-64 seq117 75.2 3e-11 >seq47 Length=279382 Score = 527 bits (584), Expect = 2e-147 Identities = 417/496 (84%), Gaps = 3/496 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 78953 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 79012 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 ||||||||||||||||||||||| |||||||||||| | ||||||| | | |||| | Sbjct 79013 GTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCACCTTTTGACATGCCCGGACCACCA 79072 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||||| | |||||| ||||||| || | | ||||||| ||||||| ||||||||| Sbjct 79073 GAGAGATCTGGCTTTCCC-TTCGGGG-ACTGGGACACAGGTGCTGCATGGCTGTCGTCAG 79130 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 79131 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGCTGTTAGTTGC 79190 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || |||| ||||||||||||||| ||||||||| | || ||||||||||| ||||| Sbjct 79191 CACCATTCAGTTGGGCACTCTAACAGGACTGCCGGAGTTAATCCGGAGGAAGGCGGGGAT 79250 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| || ||||| |||||| | |||||||||||||||||||||||| | ||| Sbjct 79251 GACGTCAAGTCCTCATGGCCCTTACAAGGTGGGCTACACACGTGCTACAATGGCGACTAC 79310 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 | |||| || | |||||||| ||| |||||| ||||| | ||||||||||||||| Sbjct 79311 AGAGGGTTGCAATCCCGCGAGGGGGAGCCAATCCCTAAAAGTCG-TCTCAGTTCGGATTG 79369 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTAC 480 | |||||||||||| |||||| |||||||||||||||||| ||||||||||| | Sbjct 79370 TTCTCTGCAACTCGAGAGCATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGC 79429 Query 481 GGTGAATACGTTCCCG 496 |||||||||||||||| Sbjct 79430 GGTGAATACGTTCCCG 79445 >seq427 Length=39484 Score = 250 bits (276), Expect = 7e-64 Identities = 357/500 (71%), Gaps = 37/500 (7%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 9491 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 9432 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||| ||||| || | | | | | Sbjct 9431 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAA----TTTTTATA 9383 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 || | ||| | | | ||||||| ||||||| ||||||||||||||| Sbjct 9382 TAAAATTTTATAT--------AAAAA---ACAGGTGTTGCATGGCTGTCGTCAGCTCGTG 9334 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA--TC 244 | |||| ||||| |||||| ||| |||||||||||||| || |||||| | | | Sbjct 9333 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCCTATTATTAGTTACTAATTT 9274 Query 245 ATT---AAGTTGG----GCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 ||| || || | ||||||| | ||| | |||||||||| Sbjct 9273 ATTTTAAATATGTAAAAGTACTCTAATAAAAAAATTAATGATAGGTTAATGGAAGGTGGG 9214 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || |||||||| || ||||| ||||||||| ||||||||||||||||||||||||| | Sbjct 9213 GATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAATGGTAAT 9154 Query 358 TACAAAGGGCAGCGAAACCG-----CGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGT 412 ||||| | | || | | || || | |||||| | ||||| | ||| ||| Sbjct 9153 TACAATGAGAGGCAATAACGATTTAAAAGTTGGAGCAAA-ACTTTAAAGATTATCTTAGT 9095 Query 413 TCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG 472 ||||||| | ||| |||||| | ||| |||||||||||||||||||||| ||| ||| Sbjct 9094 TCGGATTAAGGGCTGAAACTCGCCCTTATAAAGCTGGAATCGCTAGTAATCGCAGAACAG 9035 Query 473 CATGCTACGGTGAATACGTT 492 |||||| ||||||||| ||| Sbjct 9034 CATGCTGCGGTGAATATGTT 9015 >seq117 Length=192600 Score = 75.2 bits (82), Expect = 3e-11 Identities = 63/76 (83%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 288 GGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGA-TTTGGGCTACACACGTGCT 346 |||||||||||| |||||||| || ||||| ||||| | | || | ||||||||| |||| Sbjct 34850 GGAAGGTGGGGATGACGTCAAGTCTTCATGGCCCTTGTAAGTTCGCGCTACACACATGCT 34909 Query 347 ACAATGGACAATACAA 362 ||||||| | ||||| Sbjct 34910 ACAATGGTAACTACAA 34925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503971679680