Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq559 309 5e-82 seq51 309 5e-82 seq24 154 2e-35 seq212 147 3e-33 seq293 141 1e-31 seq22 125 1e-26 seq263 120 5e-25 seq238 73.4 6e-11 >seq559 Length=16282 Score = 309 bits (342), Expect = 5e-82 Identities = 219/250 (88%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9413 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 9354 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC-----AGCCACCAACC 128 ||||||| |||| | || | |||| ||||||||||||||| | | | ||||| Sbjct 9353 CAACTTCCTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCACAAACCTACCAAAA 9294 Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || || || |||||||||| | ||||||||||||||| |||||||||||||||| Sbjct 9293 ATGGTAAGCGGAACTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACA 9234 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9233 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTC 9174 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 9173 TCAATCTGTC 9164 >seq51 Length=275480 Score = 309 bits (342), Expect = 5e-82 Identities = 219/250 (88%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25032 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 25091 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC-----AGCCACCAACC 128 ||||||| |||| | || | |||| ||||||||||||||| | | | ||||| Sbjct 25092 CAACTTCCTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCACAAACCTACCAAAA 25151 Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || || || |||||||||| | ||||||||||||||| |||||||||||||||| Sbjct 25152 ATGGTAAGCGGAACTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACA 25211 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25212 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTC 25271 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 25272 TCAATCTGTC 25281 Score = 309 bits (342), Expect = 5e-82 Identities = 219/250 (88%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 38421 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 38480 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC-----AGCCACCAACC 128 ||||||| |||| | || | |||| ||||||||||||||| | | | ||||| Sbjct 38481 CAACTTCCTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCACAAACCTACCAAAA 38540 Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || || || |||||||||| | ||||||||||||||| |||||||||||||||| Sbjct 38541 ATGGTAAGCGGAACTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACA 38600 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 38601 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTC 38660 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 38661 TCAATCTGTC 38670 Score = 309 bits (342), Expect = 5e-82 Identities = 219/250 (88%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 57327 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 57386 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC-----AGCCACCAACC 128 ||||||| |||| | || | |||| ||||||||||||||| | | | ||||| Sbjct 57387 CAACTTCCTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCACAAACCTACCAAAA 57446 Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || || || |||||||||| | ||||||||||||||| |||||||||||||||| Sbjct 57447 ATGGTAAGCGGAACTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACA 57506 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 57507 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTC 57566 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 57567 TCAATCTGTC 57576 >seq24 Length=392057 Score = 154 bits (170), Expect = 2e-35 Identities = 184/245 (75%), Gaps = 10/245 (4%) Strand=Plus/Minus Query 23 AGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT- 81 |||||| |||| | ||||||||| ||||||||||| ||| |||||||||||| || || Sbjct 316012 AGCGCGAGTGCCGTCCAGAACATTTAAGGGCATCATAGATTTGTTATTGCCTCCAAGTTA 315953 Query 82 CCATTGGCTG-GAAGCCAATAGTCCCTCTAAGAAG----CCAGCCACCAACCATAGTCGA 136 ||| ||| | |||| ||||| |||||||| | | || || || || Sbjct 315952 TTTTTGTCTGATTACCCAAATGTCCCGCTAAGAAGTCCACAATCCTGTAAAAATGGTAAG 315893 Query 137 TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTC 196 || | ||||||||| | |||||||||||||||| | ||| ||||||| | | ||| Sbjct 315892 CGGAGTTATTTAGCACGCGAAGGTCTCGTTCGTTAAC-GAAAGCACCAGACTATTGACTT 315834 Query 197 CACCAACTAAGAACGGCCATG---CACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||| ||| |||| |||||||||||||| |||||||||| |||| ||| Sbjct 315833 CACCAACTAAGAGCGGTCATGCACCACCACCACCCATACAATCAAGAAAAAGCTCATAAT 315774 Query 254 CTGTC 258 ||||| Sbjct 315773 CTGTC 315769 >seq212 Length=129902 Score = 147 bits (162), Expect = 3e-33 Identities = 188/254 (74%), Gaps = 14/254 (6%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTA-AGGGCATCACAGACCTGTTATTGCCT 74 ||||||||| ||||||| ||||||| | ||||| ||| | |||||||| |||||||||| Sbjct 99000 TCAGTGTAGTGCGCGTGTGGCCCAGGATATCTATAGGACGTCACAGACTTGTTATTGCCC 99059 Query 75 CAAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAG-CCAGCCACCAACCATA 131 | || || |||| | | | ||||||||||||| | |||| ||| ||| |||| | Sbjct 99060 CCAAATTTTTTTGGTTTAACTACCCAATAGTCCCTCAAGGAAGTCCACAAACCTACCAAA 99119 Query 132 GTCGATGGG--GCTA-----TTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 |||| || | ||| || | |||||||||| |||| || | |||| Sbjct 99120 A---ATGGTAAGCAAAATCATTTGGCTCGCGGAGGTCTCGTTTGTTACCGAGAGACACCA 99176 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 ||||||||||| ||||| | ||| |||||||||||||| ||||| |||| ||||||| Sbjct 99177 GACAAATCACTTTACCAATTCAGAGCGGCCATGCACCACAACCCAAAGAAATTAGAAAGA 99236 Query 245 GCTATCAATCTGTC 258 ||| ||||| |||| Sbjct 99237 GCTCTCAATTTGTC 99250 >seq293 Length=87265 Score = 141 bits (156), Expect = 1e-31 Identities = 184/245 (75%), Gaps = 17/245 (7%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||| |||| |||||||| | ||||| | |||||||| || Sbjct 50210 TCAGTGTAGCGCGCGTGCGGTCCAGGACATCTAAACG--TCACAAATTTGTTATTGTTTC 50267 Query 76 AAACTTCCATTGGCTGGAAG--CCAATAGTCCCTCTAAGAAG-CCAGCCACCAACCATAG 132 || ||||| || | || |||| |||||||| || || ||| ||| |||| | Sbjct 50268 AA-CTTCCTTTATTTTGACTTCCCAAAAGTCCCTCGAAAAATTCCAAAAACCTACCAGCG 50326 Query 133 TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAAC--CAGACAAA 190 || ||||||||| | || |||||||||| ||| || || ||| ||| | || Sbjct 50327 AA-AT-----TATTTAGCACGATA-GGTCTCGTTCTTTAACG--ATAAACAACAGGCGAA 50377 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 ||||||||||||| ||| |||||||||||||||||||||||| |||||||||| | Sbjct 50378 TCACTCCACCAACAAAGTACGGCCATGCACCACCACCCATAGGGATGAGAAAGAGCTCCC 50437 Query 251 AATCT 255 ||||| Sbjct 50438 AATCT 50442 >seq22 Length=393590 Score = 125 bits (138), Expect = 1e-26 Identities = 179/244 (73%), Gaps = 16/244 (7%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||| |||||||| |||| |||||||| | ||||| || |||||||| || Sbjct 383784 TCAGTGTAGCGTGCGTGCGGTCCAGGACATCTAAACG--TCACAAACTTGTTATTGTTTC 383727 Query 76 AAACTTCCATTGGCTGGAAG--CCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 || ||||| || | || |||| |||||||| || | ||| || |||| | Sbjct 383726 AA-CTTCCTTTATTTTGACTTCCCAAAAGTCCCTCGAAAATTCCAAAATCCTACCAGCGA 383668 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAAC--CAGACAAAT 191 || ||||||||| | || |||||||||| ||| || || ||| ||| | ||| Sbjct 383667 A-AT-----TATTTAGCACGCTA-GGTCTCGTTCCTTAACG--ATAAACAACAGGCGAAT 383617 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | ||||||| ||| |||||||||||||||||||||||| ||||||||||| || Sbjct 383616 CTTTCCACCATTAAAGTACGGCCATGCACCACCACCCATAGGGATAAGAAAGAGCTCCCA 383557 Query 252 ATCT 255 |||| Sbjct 383556 ATCT 383553 >seq263 Length=98259 Score = 120 bits (132), Expect = 5e-25 Identities = 80/88 (91%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||| | || | ||||| ||||||||||||||||||||| | |||||||||| Sbjct 59424 GTCTCGTTCGTCAACGAAGTTAAC-AGACAAATCACTCCACCAACTGAATACGGCCATGC 59482 Query 219 ACCACCACCCATAGAATCAAGAAAGAGC 246 |||||||||||||||||||||||||||| Sbjct 59483 ACCACCACCCATAGAATCAAGAAAGAGC 59510 >seq238 Length=114113 Score = 73.4 bits (80), Expect = 6e-11 Identities = 79/102 (77%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 ||| || ||| | ||| |||| || |||||| |||||| |||| ||| ||||| | Sbjct 7475 AGGGCTTGTTTGCTATTTAAATTGACTAGACAAGTCACTCAACCATTTAA-AACGGTAAA 7417 Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||| || | |||||||| Sbjct 7416 -CACCACCACCCATAGAATCAAGAAATAGTTTATAATCTGTC 7376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796785465123