Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq51 307 2e-81 seq48 307 2e-81 seq24 284 2e-74 seq281 129 1e-27 seq217 114 2e-23 seq285 77.0 6e-12 >seq51 Length=275480 Score = 307 bits (340), Expect = 2e-81 Identities = 228/264 (86%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||| |||||| |||| ||| ||||||||| |||||||||||||||||||| Sbjct 33529 CATCAGTAGGGTAGAACTAATCTGTTTCACGACGGTCTACACCCAGCTCACGTTCCCTAT 33588 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||||||||||||||||| ||| ||| |||| || | |||||||||||||||||| Sbjct 33589 TAGTGGGTGAACAATCCAATCATTAGCGAGTTCTAGTTTGCAATGATAGGAAGAGCCGAC 33648 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||| |||||||||||||||| ||||| ||||||||||||||| ||| ||||||| Sbjct 33649 ATCGAAAAATCAAAAAGCAACGTCACTATGGACGCTTGGCTGCCACGAGCATATTATCCC 33708 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAG-GGACTAAAGGATCGATAGG 270 |||| | ||||||||| |||||||||| | ||| ||| || | ||||||||||||||||| Sbjct 33709 TGTGATCACTTTTCTGTCACCTCTAGCAT-AAAATTCAAGAGAACTAAAGGATCGATAGG 33767 Query 271 CCACACTTTCATGGTTTGTATTCA 294 ||| |||||| ||||||||||| Sbjct 33768 TCACGCTTTCACTGTTTGTATTCA 33791 Score = 307 bits (340), Expect = 2e-81 Identities = 228/264 (86%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||| |||||| |||| ||| ||||||||| |||||||||||||||||||| Sbjct 51685 CATCAGTAGGGTAGAACTAATCTGTTTCACGACGGTCTACACCCAGCTCACGTTCCCTAT 51744 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||||||||||||||||| ||| ||| |||| || | |||||||||||||||||| Sbjct 51745 TAGTGGGTGAACAATCCAATCATTAGCGAGTTCTAGTTTGCAATGATAGGAAGAGCCGAC 51804 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||| |||||||||||||||| ||||| ||||||||||||||| ||| ||||||| Sbjct 51805 ATCGAAAAATCAAAAAGCAACGTCACTATGGACGCTTGGCTGCCACGAGCATATTATCCC 51864 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAG-GGACTAAAGGATCGATAGG 270 |||| | ||||||||| |||||||||| | ||| ||| || | ||||||||||||||||| Sbjct 51865 TGTGATCACTTTTCTGTCACCTCTAGCAT-AAAATTCAAGAGAACTAAAGGATCGATAGG 51923 Query 271 CCACACTTTCATGGTTTGTATTCA 294 ||| |||||| ||||||||||| Sbjct 51924 TCACGCTTTCACTGTTTGTATTCA 51947 >seq48 Length=277641 Score = 307 bits (340), Expect = 2e-81 Identities = 228/264 (86%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||| |||||| |||| ||| ||||||||| |||||||||||||||||||| Sbjct 257064 CATCAGTAGGGTAGAACTAATCTGTTTCACGACGGTCTACACCCAGCTCACGTTCCCTAT 257123 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||||||||||||||||| ||| ||| |||| || | |||||||||||||||||| Sbjct 257124 TAGTGGGTGAACAATCCAATCATTAGCGAGTTCTAGTTTGCAATGATAGGAAGAGCCGAC 257183 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||| |||||||||||||||| ||||| ||||||||||||||| ||| ||||||| Sbjct 257184 ATCGAAAAATCAAAAAGCAACGTCACTATGGACGCTTGGCTGCCACGAGCATATTATCCC 257243 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAG-GGACTAAAGGATCGATAGG 270 |||| | ||||||||| |||||||||| | ||| ||| || | ||||||||||||||||| Sbjct 257244 TGTGATCACTTTTCTGTCACCTCTAGCAT-AAAATTCAAGAGAACTAAAGGATCGATAGG 257302 Query 271 CCACACTTTCATGGTTTGTATTCA 294 ||| |||||| ||||||||||| Sbjct 257303 TCACGCTTTCACTGTTTGTATTCA 257326 Score = 295 bits (326), Expect = 1e-77 Identities = 222/261 (85%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||| |||||| |||| ||| ||| ||||||||||||||||||||| |||| Sbjct 244937 CATCAGTAGGGTAGAACTAATCTGTTTCACGACAGTCTAAACCCAGCTCACGTTCTCTAT 244996 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||| |||| ||||| |||| || ||| |||| || | |||||||||||||||||| Sbjct 244997 TAGTAGGTGGACAATGCAACCATTGGCGAGTTCTAGTTTGCAATGATAGGAAGAGCCGAC 245056 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||||||| |||||||||||||||| ||||| |||||||||||||||||||| ||||||| Sbjct 245057 ATCGAAGAATCAAAAAGCAACGTCACTATGGACGCTTGGCTGCCACAAGCCTATTATCCC 245116 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 |||| ||||||||||| |||||||||| | || | | | |||||||||||||||||| Sbjct 245117 TGTGATAACTTTTCTGACACCTCTAGCTTGAATCTCAAAAGAACTAAAGGATCGATAGGC 245176 Query 272 CACACTTTCATGGTTTGTATT 292 || |||||| ||||||||| Sbjct 245177 CAAGCTTTCACTGTTTGTATT 245197 >seq24 Length=392057 Score = 284 bits (314), Expect = 2e-74 Identities = 224/267 (84%), Gaps = 1/267 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||| |||| | ||| || |||||| ||||||||| ||||||||| ||||||||| Sbjct 316733 TCATCAGTACGGTAGAGCTAGCCGGTCTCACGACGGTCTATACCCAGCTCGCGTTCCCTA 316674 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 | ||||||||||||||||||| || || |||| ||| | ||||||||||||||||| Sbjct 316673 TAAGTGGGTGAACAATCCAACAATTGATGAGTTCTTCTTTGCAATGATAGGAAGAGCCGA 316614 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| ||| ||| ||| |||||||||||||| |||||||||||||| |||||||||| | Sbjct 316613 CATCAAAGAATCGAAA-GCAACGTCGCTATGGACGCTTGGCTGCCAAAAGCCAGTTAATC 316555 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 |||| || ||||||||| |||||||||| ||| || || | ||| ||||||||||||| Sbjct 316554 CTGTAGTGACTTTTCTGACACCTCTAGCTCAAAACTTAGAAGAACTGAAGGATCGATAGG 316495 Query 271 CCACACTTTCATGGTTTGTATTCACCT 297 || | |||||| ||| |||||||| || Sbjct 316494 CCTCGCTTTCACGGTATGTATTCATCT 316468 >seq281 Length=91634 Score = 129 bits (142), Expect = 1e-27 Identities = 124/158 (78%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||| || |||||| |||||||| || ||||||| | ||| Sbjct 60578 TCATCAGTAGGGTAAAACTTACTGGTCTCACAACGGTCTAGGCC-AGCTCACAGTTTCTA 60636 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| ||| ||| | | || || | |||||| |||| | ||||||||||||||| Sbjct 60637 ATAGCGGGCGAATATTATAATAATTGGCAAATTCTACTTCACAACGATAGGAAGAGCCGA 60696 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT 188 ||||| || | |||||||||||||||||||| |||||| Sbjct 60697 CATCGTAGAACCAAAAAGCAACGTCGCTATGGACGCTT 60734 >seq217 Length=127150 Score = 114 bits (126), Expect = 2e-23 Identities = 118/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTA-ACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 || ||| ||||||||| ||| |||||||| | ||||| |||| |||||| | || || Sbjct 127022 TCGTCAATAGGGTAAA-CTATACCTGTCTAACAACGGTATAAATCCAGCTTATCTTGCCA 126964 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||| || ||||||||||||| || || || | ||||| ||| |||||||| || Sbjct 126963 ATTGGTTAATGAACAATCCAACATTTGGTGAGTTTTACTTCGCAATGGCAGGAAGAGTCG 126904 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 ||||||||| ||||| |||||||||||| ||| Sbjct 126903 ACATCGAAGAATCAACAAGCAACGTCGCAATG 126872 >seq285 Length=89782 Score = 77.0 bits (84), Expect = 6e-12 Identities = 96/129 (74%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTA-ACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| | ||||||| ||| |||||||| | ||||| |||| |||||| | |||||| Sbjct 64453 TCATCGATTGGGTAAA-CTATACCTGTCTAACAACGGTATAAATCCAGCTTATGTTCCCA 64511 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||| || ||||||||||||| || || |||| ||| | ||| | ||| | || Sbjct 64512 ATTGGTTAATGAACAATCCAACATTTGGTGAGTTCTACTTTGCAATGGCGGAAAGGGTCG 64571 Query 150 ACATCGAAG 158 ||||||||| Sbjct 64572 ACATCGAAG 64580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854383911648