Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq47 176 9e-42 seq427 118 2e-24 seq18 91.5 3e-16 >seq47 Length=279382 Score = 176 bits (194), Expect = 9e-42 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 125 CGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCC 184 |||||||||||||||||||||||||||||||||| ||||||||||||| | | | | | Sbjct 82375 CGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGTGTAACGGAGGCGCGCGATGGTGGGC 82434 Query 185 TCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACAC 244 |||| || ||||| | || ||||||| |||| ||| | ||||||||| || Sbjct 82435 TCAGACCGGTCGGAAATCGGTCGTCGAGTGCAATGGCATAAGCCCGCCTGACTGCGAGAC 82494 Query 245 CCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGG 304 |||||| ||||| |||||||||||| | || |||||||| ||| ||| ||||| || Sbjct 82495 TGACAAGTCGAGCAGAGACGAAAGTCGGCCATAGTGATCCGGTGGTCCTGCGTGGAAGGG 82554 Query 305 CCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || |||||| ||| ||||||| ||| || |||||| Sbjct 82555 CCATCGCTCAACGAATAAAAGGTACTCTAGGGATA 82589 >seq427 Length=39484 Score = 118 bits (130), Expect = 2e-24 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||||| | || |||||||||||||||||| ||||| ||||||||||||||| | Sbjct 6045 GACAGTGTATGGTTGGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGT 6104 Query 173 CCAAAGATACCCTCAGCTTGGAT--GGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 ||||| || ||||| |||||| | | || | | | | || || ||||| || Sbjct 6105 ACAAAGGTAAGCTCAGATTGGATAATAATATCAATTGTAGAATATAATGGTAAAAGCTTG 6164 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 ||||||| | | || || | |||||||||||||||| | || ||||||| | Sbjct 6165 CTTGACTGTAAGATAGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAAT 6224 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||||| | |||||| ||||||||||| ||| | ||||||| Sbjct 6225 TCTTTGTGGAAAGATTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 6273 >seq18 Length=401396 Score = 91.5 bits (100), Expect = 3e-16 Identities = 116/159 (73%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 || |||||||||||||||||| ||||| ||||||||||| ||| || ||||| || ||| Sbjct 379885 GGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGTAGGTGCACAAAGGTAAGCTC 379944 Query 187 AGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCC 246 | ||||| ||| | | ||| || ||||| || ||||||| | | Sbjct 379945 AAATTGGA---AAATAGTATCAATTGTG----GGTAAAAGCTTGCTTGACTGTAAGATAG 379997 Query 247 TCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCG 285 || || |||||||||||||||||| | |||||||||| Sbjct 379998 ACATATCAAGCAGGGACGAAAGTCGGTCATAATGATCCG 380036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982381501408